Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23o08
         (477 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51549| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.21 
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.49 
SB_39751| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_54854| Best HMM Match : LepA_C (HMM E-Value=5.1)                    28   4.5  
SB_8817| Best HMM Match : I-set (HMM E-Value=0)                        28   4.5  
SB_13357| Best HMM Match : 7tm_1 (HMM E-Value=0.0011)                  27   6.0  

>SB_51549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 630

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = +1

Query: 316 ALESVLTQSPNINETRKLKSTTNI 387
           AL+SV+TQ  N+N+TR L  +TNI
Sbjct: 330 ALKSVVTQKKNVNDTRILSCSTNI 353


>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +1

Query: 346 NINETRKLKSTTNISVNTRKNSSNHENLNFITN*NN 453
           NIN  R   S++N + N+  NS+++ N+N  +N N+
Sbjct: 118 NINSNRNSNSSSNSNSNSNNNSNSNNNINSNSNSNS 153


>SB_39751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +1

Query: 292 ILQIISLRALESVLTQSPN-INETRKLKSTTNISVNTRKNSSNHENLNFITN*NNIV 459
           +L+ IS   + +++T + N IN     KS+ NI+     N  N++N+N   N NNI+
Sbjct: 17  VLEEISSILVINIMTNNNNSINNKNSEKSSNNIN-----NDFNYKNINKSNNINNII 68


>SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2028

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 301 IISLRALESVLTQSPNINETRKLKSTT 381
           +ISLR  E V T SPNI E     ST+
Sbjct: 908 LISLRTAEDVPTASPNITEAYNTSSTS 934


>SB_54854| Best HMM Match : LepA_C (HMM E-Value=5.1)
          Length = 372

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = +3

Query: 264 TVSSISPMSYSANNFIARARVSTHSKPKYKRDPEIEVDNEYIGEHPQEFI*SRK 425
           T+  ++P+S+     I R   ++  +PK    P ++VD+EY    P++ + SR+
Sbjct: 73  TLQVLTPVSFKPRRNIRRT--NSERRPKGMTKP-VDVDSEYSDSSPEKTLRSRR 123


>SB_8817| Best HMM Match : I-set (HMM E-Value=0)
          Length = 2526

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 240  IEPCS-DDDTVSSISPMSYSANNFIARARVSTHSKPKYKRDPE 365
            IE C+ DDD V S+  M+  A    ++ ++  HS+PK ++  E
Sbjct: 1849 IEGCAPDDDAVYSVVAMN-EAGKDTSKGKLLVHSRPKQEQPTE 1890


>SB_13357| Best HMM Match : 7tm_1 (HMM E-Value=0.0011)
          Length = 358

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 319 LESVLTQSPNINETRKLKSTTNISVNTRK 405
           L SVL+ SP  N+ R+    +NIS +TR+
Sbjct: 258 LRSVLSGSPEHNKRRESTQQSNISTSTRQ 286


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,534,085
Number of Sequences: 59808
Number of extensions: 256042
Number of successful extensions: 693
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)