Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23o07
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    26   2.9  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   6.7  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    25   8.8  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   8.8  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    25   8.8  

>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +1

Query: 187 KVTKKDFIETKNADNA*KCNFAYY-ELY*NVTCEMYVYGRSKGGES*SIWVQYKLCQSW 360
           K  +KDFI+ K+     K  F+YY E       E YV G         ++  Y+ CQSW
Sbjct: 487 KNVEKDFIQWKDDYYRSKVGFSYYDEEALKAMAERYVEGLQW-----VLFYYYRGCQSW 540


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 377 LICLPGALGTIWTDYKPXIEG 439
           ++CLP  +G IW D  P + G
Sbjct: 608 VLCLPNIVGEIWVD-SPSLSG 627


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 275 LHAKCMSTAVPKEEKVKVSGCNINYVK 355
           LHA   STA+   E V   GCN +  K
Sbjct: 376 LHATKASTALTSGEGVFADGCNFDLYK 402


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -3

Query: 315 SSFGTAVDIHFACNILIQFVVRKIAFLSVISIFSFNEIFLSHFLFRKDRCTY*FKK 148
           S F   +DI+F  N  +     +   L  +S+FS   +FL   LF  +   +  KK
Sbjct: 6   SFFSNYIDINFFRNATLD----QCLLLFYLSLFSLTNLFLIQKLFHANHTQHPLKK 57


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = -1

Query: 425 VYNRSR*FQGLQVNKLNCEILYQL*HSLYC 336
           +Y+    F+  +V+K++C++   + HS+ C
Sbjct: 524 IYHELSLFRSQEVSKVDCQLAAHVSHSIEC 553


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,843,873
Number of Sequences: 5004
Number of extensions: 35201
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)