Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23o07
         (512 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0515 - 18473545-18473791,18473921-18474156,18474299-184744...    34   0.077
01_01_1078 + 8489872-8490168,8490280-8490462,8490667-8490908,849...    28   3.8  
01_01_1077 + 8485655-8486134,8486423-8486554,8487725-8487966,848...    28   3.8  
10_08_0517 + 18482902-18482986,18483074-18483291,18483888-184840...    27   8.8  
06_01_1093 - 8970996-8971667,8971756-8971902,8971982-8972118,897...    27   8.8  

>10_08_0515 -
           18473545-18473791,18473921-18474156,18474299-18474460,
           18474731-18474948,18475048-18475120
          Length = 311

 Score = 33.9 bits (74), Expect = 0.077
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = +2

Query: 326 VSGCNINYVKVGKGSHNLICLPGALGTIWTDYKPXIEGIDKNDFTLVAWDPPGYGKSRPP 505
           + G  ++   +GKG    +        +W  ++  +       F  +A D PGYG S PP
Sbjct: 12  IRGLKLHIAHIGKGEAATLLFVHGFPEVWYSWRHQMIAAAAAGFRAIALDFPGYGLSEPP 71


>01_01_1078 +
           8489872-8490168,8490280-8490462,8490667-8490908,
           8490988-8491240
          Length = 324

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +2

Query: 290 MSTAVPKEEKVKV-SGCNINYVKVGKGSHNLICLPGALGTIWTDYKPXIEGIDKNDFTLV 466
           M+ A  +  +V+V SG  ++  + G     +  L      +W  ++  +  +    F  V
Sbjct: 1   MAAAAVRHREVEVASGVRLHVAESGPEGGPVALLVHGFPELWYSWRHQMRALAARGFRAV 60

Query: 467 AWDPPGYGKSRPP 505
           A D  GYG S  P
Sbjct: 61  APDLRGYGDSDAP 73


>01_01_1077 +
           8485655-8486134,8486423-8486554,8487725-8487966,
           8488254-8488500
          Length = 366

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
 Frame = +2

Query: 290 MSTAVPKEEKVKV-SGCNINYVKVGKGSHNLICLPGALGTIWTDYKPXIEGIDKNDFTLV 466
           M+ A  +   V+V SG  ++  + G      + L      +W  ++  +  +    F  V
Sbjct: 1   MAAAEVRHRTVEVASGVRLHVAEAGPEDGPAVLLVHGFPELWYSWRHQMRALAARGFRAV 60

Query: 467 AWDPPGYGKSRPP 505
           A D  GYG S  P
Sbjct: 61  APDLRGYGDSDAP 73


>10_08_0517 +
           18482902-18482986,18483074-18483291,18483888-18484049,
           18484132-18484367,18484455-18484710
          Length = 318

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/60 (25%), Positives = 24/60 (40%)
 Frame = +2

Query: 326 VSGCNINYVKVGKGSHNLICLPGALGTIWTDYKPXIEGIDKNDFTLVAWDPPGYGKSRPP 505
           V G  ++  + GKG    +        IW  ++  +  +    +  VA D  GYG S  P
Sbjct: 16  VRGLTLHVAQAGKGELGTVVFLHGFPEIWYSWRHQMLAVAAAGYRAVAPDWRGYGLSDQP 75


>06_01_1093 -
           8970996-8971667,8971756-8971902,8971982-8972118,
           8972343-8972612,8972731-8972868,8974965-8975394
          Length = 597

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 389 PGALGTIWTDYKPXIEGIDKNDFTLVAWDPPGYGK 493
           PG LGT+W+  +    G  +      AW  PG G+
Sbjct: 15  PGQLGTLWSTLEDQRGGAREVPLLSSAWGLPGGGR 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,212,592
Number of Sequences: 37544
Number of extensions: 204546
Number of successful extensions: 422
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)