Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23o07
         (512 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119260-1|AAM51120.1|  278|Drosophila melanogaster SD22712p pro...    84   1e-16
AE014297-3163|AAF56005.1|  278|Drosophila melanogaster CG5377-PA...    84   1e-16
X04813-1|CAA28502.1| 2236|Drosophila melanogaster protein ( Dros...    28   6.5  
X03875-1|CAA27509.1|  414|Drosophila melanogaster protein ( D. m...    28   6.5  

>AY119260-1|AAM51120.1|  278|Drosophila melanogaster SD22712p
           protein.
          Length = 278

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 35/69 (50%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
 Frame = +2

Query: 311 EEKVKVSGCNINYVKVGKGSHNLICLPGALGTIWTDYKPXIEGIDK--NDFTLVAWDPPG 484
           E KV+V+G ++N V+ G G  +L+ +PGALG+ WTD++P IE + K     T++AWDPPG
Sbjct: 23  ERKVRVNGSDLNIVESGSGERSLLLMPGALGSSWTDFRPQIEQLPKLLPGHTIIAWDPPG 82

Query: 485 YGKSRPPMK 511
           YGKS PP +
Sbjct: 83  YGKSVPPQR 91


>AE014297-3163|AAF56005.1|  278|Drosophila melanogaster CG5377-PA
           protein.
          Length = 278

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 35/69 (50%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
 Frame = +2

Query: 311 EEKVKVSGCNINYVKVGKGSHNLICLPGALGTIWTDYKPXIEGIDK--NDFTLVAWDPPG 484
           E KV+V+G ++N V+ G G  +L+ +PGALG+ WTD++P IE + K     T++AWDPPG
Sbjct: 23  ERKVRVNGSDLNIVESGSGERSLLLMPGALGSSWTDFRPQIEQLPKLLPGHTIIAWDPPG 82

Query: 485 YGKSRPPMK 511
           YGKS PP +
Sbjct: 83  YGKSVPPQR 91


>X04813-1|CAA28502.1| 2236|Drosophila melanogaster protein (
           Drosophila melanogasterrudimentary gene. ).
          Length = 2236

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 323 KVSGCNINYVKVGKGSHNLICLPGALG 403
           K  GC+   +K+G   HNL CL  A G
Sbjct: 282 KAIGCSTYKMKIGNRGHNLPCLHRATG 308


>X03875-1|CAA27509.1|  414|Drosophila melanogaster protein ( D.
           melanogaster rudimentarygene 5'-flank, exons 1 and 2
           (partial)  coding for carbanylphosphate synthetase (EC
           2.7.2.9), aspartate  transcarbamylase(EC 2.1.3.2) and
           dihydro-orotase (EC 3.5.2.3).  ).
          Length = 414

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 323 KVSGCNINYVKVGKGSHNLICLPGALG 403
           K  GC+   +K+G   HNL CL  A G
Sbjct: 280 KAIGCSTYKMKIGNRGHNLPCLHRATG 306


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,183,992
Number of Sequences: 53049
Number of extensions: 360026
Number of successful extensions: 747
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1867000320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)