Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23o07
         (512 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   1.9  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    22   3.2  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    22   3.2  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    22   3.2  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   5.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 455 FTLVAWDPPGYGKSRPPMK 511
           F L+  DP  Y K RPP K
Sbjct: 38  FDLLPEDPKLYDKMRPPKK 56


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 73  ISKYIKCLFDEVEC 114
           ++ Y KCL DE  C
Sbjct: 44  LNNYFKCLMDEGRC 57


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 73  ISKYIKCLFDEVEC 114
           ++ Y KCL DE  C
Sbjct: 44  LNNYFKCLMDEGRC 57


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 73  ISKYIKCLFDEVEC 114
           ++ Y KCL DE  C
Sbjct: 44  LNNYFKCLMDEGRC 57


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 365 GSHNLICLPGALGTIW 412
           G HNL  +PG LG I+
Sbjct: 330 GVHNLHGMPGILGGIF 345


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +2

Query: 365 GSHNLICLPGALGTIW 412
           G  +++C+PG +  IW
Sbjct: 536 GLSSMLCIPGYMIYIW 551


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +2

Query: 365 GSHNLICLPGALGTIW 412
           G  +++C+PG +  IW
Sbjct: 589 GLSSMLCIPGYMIYIW 604


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,735
Number of Sequences: 438
Number of extensions: 2513
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)