Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23n24
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    31   0.13 
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    25   6.7  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   6.7  
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    25   8.8  
SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch...    25   8.8  

>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 1/136 (0%)
 Frame = +2

Query: 35  NYNGSKESLPNTKYLKKYITKIFTKNETRFRDRINTINGRKIS*EKIKFYKELKIKNQ*I 214
           N N S+ES PN K+    I+K+   N++   +  N  N   ++ E  K   + +     I
Sbjct: 586 NVNASEESYPNVKH----ISKLPLINDSSDNESGNQENDDAVANESTKVVVDNQQPQPKI 641

Query: 215 YNY-DSILITMEIKQNPLQTHISSRLEDKSVRNSRGRPNARNTIVFSPQPKSTIAEFLSK 391
               D+ + +M    N     + S   D         P   NT     +   T+      
Sbjct: 642 STVSDTAVPSMSFANNISSRSVISAATDSKPSTRTSPPFVNNTKPIVAKSPVTVTASSET 701

Query: 392 HKKSQDNVSKASLQIT 439
           +KKSQ    KAS +++
Sbjct: 702 NKKSQKINKKASPRVS 717


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 47  SKESLPNTKYLKKYITKIFTKNETRFRDRINTINGRK 157
           S  +LPN+   K    + +TKN   F +RI     +K
Sbjct: 728 SNHALPNSVTKKNGTKQPYTKNSLPFNERITRSKAKK 764


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +2

Query: 371 IAEFLSKHKKSQDNVSKASL 430
           I E  S H  SQDN SKASL
Sbjct: 391 IPESGSDHPSSQDNSSKASL 410


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 329 ARNTIVFSPQPKSTIAEFLSKHK-KSQDNVSKASLQITETNDCEK 460
           A   I+  P PK  +AE  SK K K ++   K ++ ++++ + +K
Sbjct: 185 AEEEILEKPVPKDEVAEKHSKDKLKKEEKEKKTAVDVSDSVNGKK 229


>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
           Crs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 229

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 89  YISLNILCLVMTLLSHCNLVQ 27
           Y+S++ LC+ ++LL  C  V+
Sbjct: 101 YVSMDTLCIAISLLDRCFTVK 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,788,156
Number of Sequences: 5004
Number of extensions: 30963
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)