Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23n24
         (513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0022 + 25128167-25128310,25128696-25128793,25128969-251289...    34   0.077
04_04_0526 + 25933019-25933126,25934092-25934189,25934382-259344...    28   5.1  
02_01_0284 + 1907249-1907665,1907816-1907859,1909508-1909546,190...    27   8.8  

>02_05_0022 +
           25128167-25128310,25128696-25128793,25128969-25128999,
           25129720-25129819,25130206-25130276,25130368-25130511,
           25131031-25131173,25131531-25131669
          Length = 289

 Score = 33.9 bits (74), Expect = 0.077
 Identities = 22/79 (27%), Positives = 40/79 (50%)
 Frame = +2

Query: 233 LITMEIKQNPLQTHISSRLEDKSVRNSRGRPNARNTIVFSPQPKSTIAEFLSKHKKSQDN 412
           L+ ++   NPL + I     DK+V     RP+AR+ IV +P PK  I +      + +  
Sbjct: 151 LLNVDGYYNPLLSFI-----DKAVEEGFIRPSARHIIVLAPTPKELIEKLEEYSPQHEKV 205

Query: 413 VSKASLQITETNDCEKYNL 469
           VSK   ++ + +  + Y++
Sbjct: 206 VSKMKWEMEQMSYPQNYDI 224


>04_04_0526 +
           25933019-25933126,25934092-25934189,25934382-25934412,
           25934672-25934695,25935192-25935291,25936082-25936152,
           25936293-25936436,25936568-25936711
          Length = 239

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +2

Query: 293 DKSVRNSRGRPNARNTIVFSPQPKSTIAEFLSKHKKSQDNVSKASLQITETNDCE 457
           DK+V      P+AR+ IV +P PK  + +  +   +    V K   ++ + + C+
Sbjct: 162 DKAVEEEFISPSARHIIVLAPTPKELLEKLEAYSPRHDKVVPKMQWEMEKMSYCK 216


>02_01_0284 +
           1907249-1907665,1907816-1907859,1909508-1909546,
           1909791-1910112,1910803-1910892,1911541-1911609,
           1911969-1912074,1912146-1912234,1912349-1912461,
           1912555-1912657
          Length = 463

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +2

Query: 305 RNSRGRPNARNTIVFSPQPKSTIAEFLSKHKKSQDNV 415
           R+SR  PNA     F P P+ +  E LSK K S+  V
Sbjct: 3   RSSRLNPNATP---FVPPPRPSFEESLSKRKASEKQV 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,706,353
Number of Sequences: 37544
Number of extensions: 145167
Number of successful extensions: 351
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)