Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23n24
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              24   1.1  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    24   1.1  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   2.4  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   2.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.9  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +1

Query: 10  FIKSCYCTKLQWLK-RVITKH 69
           F K CYC +  +LK R IT H
Sbjct: 87  FSKECYCCRESYLKERHITLH 107


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +1

Query: 10  FIKSCYCTKLQWLK-RVITKH 69
           F K CYC +  +LK R IT H
Sbjct: 87  FSKECYCCRESYLKERHITLH 107


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 107 KNETRFRDRINTINGRKIS*EKIKFYKELKIKNQ*IYNY 223
           KNE  +R    T  GR     + +  KE KI +   YNY
Sbjct: 273 KNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNY 311


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 107 KNETRFRDRINTINGRKIS*EKIKFYKELKIKNQ*IYNY 223
           KNE  +R    T  GR     + +  KE KI +   YNY
Sbjct: 284 KNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNY 322


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +2

Query: 248 IKQNPLQTHISSRLEDKSVRNSRGRPNAR 334
           ++Q  +   +++ ++ KS+ NS  RP  R
Sbjct: 530 LEQQKIPLRMTAGIDPKSIFNSGYRPKPR 558


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,844
Number of Sequences: 438
Number of extensions: 1977
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)