Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23n23
         (350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    27   1.1  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    26   1.5  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    26   1.5  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   3.4  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   4.5  
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    24   6.0  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    24   6.0  
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe...    24   7.9  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    24   7.9  

>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -1

Query: 164 ISRVPSSTDLWRLNYTYQHSWW*KCRQNILC-KNVKLHVIFVXILYQSCILILFF 3
           + R+ S    W+LN T+Q         ++L   NV LH+ +  ++ +    I+FF
Sbjct: 579 VERIYSQARNWKLNLTHQQLNGTNDTSDLLFHSNVSLHLFYHYLIVKVSCPIMFF 633


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 325 FNKSLIADAMIYGF 284
           F KSLI D M+YGF
Sbjct: 835 FQKSLIVDMMVYGF 848


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = +2

Query: 77  IYFDGIFTTMSADMYSSSATDQLTKERGICMEKNCDVRRVFMTLKECQNRIKSKTY---X 247
           ++FD  + + S D+Y S      + + GI ++   DV R          R K KT     
Sbjct: 209 LFFDTDWHSFSIDVYPSENQSLASVKMGIIIQAVVDVER--------NGRRKGKTTFQPP 260

Query: 248 AETCHQETVDLIEAI 292
           +E CH E +D +  +
Sbjct: 261 SEYCHDEDMDSLHCL 275


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 161 ICMEKNCDVRRVFMTLKECQNRIK 232
           +C ++N DVR +F+T  + Q ++K
Sbjct: 906 LCQDENFDVRNLFLTKLQKQLQLK 929


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 266 ETVDLIEAIDHCVGDKAFIKF 328
           E  D +E +D   GDKA I+F
Sbjct: 746 EPYDHMEIVDETTGDKAVIRF 766


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +2

Query: 128 SATDQLTKERGICMEKNCDVRRVFMTLKECQNRIKSKTYXAETCHQETVDLIEAI 292
           S+ D +  ++ +C     D  + F  LKE  N  K      +  H+E +  +E I
Sbjct: 200 SSIDPMDNDKIVC----ADFEKNFNILKELLNNTKDNGIDQQIVHKEHISHLEKI 250


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = +2

Query: 125 SSATDQLTKERGICMEKNCDVRRVFMTLKECQNRIKSKTYXAETCHQETVD 277
           SS   +L++ R        D+ R   T++ C N ++ K      C Q   D
Sbjct: 844 SSLQTELSRLRDEKRNSEVDIERHRQTVESCTNILREKEAKKVQCAQVVAD 894


>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 443

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = +2

Query: 83  FDGIFTTMSADMYSSSATDQLTKERGICMEKNCDVRRVFMTLKE 214
           FD  F      +  ++  D L K+  +C++K+ ++ +  + L+E
Sbjct: 71  FDARFNKARLLLNMATNCDMLYKDSQVCLQKSIEMHKHALLLQE 114


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 102  VVKMPSKYIMQKC*ITRNLCXYTVSILYSYTF 7
            ++++   Y+ +K    ++   +TVS LYSY F
Sbjct: 1794 LIELLDTYLKRKFRSIKDFLKHTVSYLYSYYF 1825


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,312,621
Number of Sequences: 5004
Number of extensions: 22792
Number of successful extensions: 49
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)