Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23n23
         (350 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0615 + 26137785-26138593,26139307-26141368                       27   5.5  
10_08_0075 - 14676835-14677173,14677776-14678426,14678734-146789...    26   9.6  
05_01_0228 + 1692117-1692924,1693321-1693431,1693536-1693675,169...    26   9.6  

>03_05_0615 + 26137785-26138593,26139307-26141368
          Length = 956

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 134 TDQLTKERGICMEKNCDVRRVFMTLKECQNRIKSKTYXAETC 259
           TD+L+    + + K  D+  +   LKE +N+++   Y  E C
Sbjct: 37  TDELSSMNALLL-KLADMEELDSQLKEWRNKVRELAYDVEDC 77


>10_08_0075 -
           14676835-14677173,14677776-14678426,14678734-14678948,
           14679510-14679783,14680249-14680410
          Length = 546

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 185 VRRVFMTLKECQNRIKSKTYXAETCHQETVDLIEAI 292
           VRR ++ L  CQ ++K + +    C +E  D   AI
Sbjct: 120 VRREYIALGPCQPKMKKEDFPQHECGEELHDECFAI 155


>05_01_0228 +
           1692117-1692924,1693321-1693431,1693536-1693675,
           1693865-1694075,1694148-1694415,1694543-1694696,
           1694795-1695123,1695748-1695835
          Length = 702

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 77  IYFDGIFTTMSADMYSSSATD 139
           IY DG F    AD ++++ATD
Sbjct: 123 IYLDGCFLRYGADNFTAAATD 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,906,006
Number of Sequences: 37544
Number of extensions: 128401
Number of successful extensions: 222
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)