Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23n23
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82059-1|CAB04873.1|   75|Caenorhabditis elegans Hypothetical pr...    53   7e-08
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    30   0.41 
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    30   0.41 
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>Z82059-1|CAB04873.1|   75|Caenorhabditis elegans Hypothetical
           protein T27E9.2 protein.
          Length = 75

 Score = 52.8 bits (121), Expect = 7e-08
 Identities = 24/61 (39%), Positives = 35/61 (57%)
 Frame = +2

Query: 137 DQLTKERGICMEKNCDVRRVFMTLKECQNRIKSKTYXAETCHQETVDLIEAIDHCVGDKA 316
           DQLT+ R  C +   + + +   L EC +R+ S++   ETCHQE  D +  +DHC   KA
Sbjct: 14  DQLTQYRERCADHVTEFKSI---LDECNDRVNSRSNTEETCHQEMADYVHHLDHCAMPKA 70

Query: 317 F 319
           F
Sbjct: 71  F 71


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
           protein F29D11.1 protein.
          Length = 4753

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +2

Query: 137 DQLTKERGICMEKNCDVRRVFMTLKECQNRIKSKTYXAETCHQETVDLIEAIDHCVGDK 313
           D LT  RG C+  N D  ++F+  +E   R+  K    E     + + I  ID   GD+
Sbjct: 379 DNLTM-RGYCVSNNADKMKLFVARREGLYRLNPKNPDEEVKKLASGEFIYGIDFDYGDR 436


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
           receptor-related protein protein.
          Length = 4753

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +2

Query: 137 DQLTKERGICMEKNCDVRRVFMTLKECQNRIKSKTYXAETCHQETVDLIEAIDHCVGDK 313
           D LT  RG C+  N D  ++F+  +E   R+  K    E     + + I  ID   GD+
Sbjct: 379 DNLTM-RGYCVSNNADKMKLFVARREGLYRLNPKNPDEEVKKLASGEFIYGIDFDYGDR 436


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical protein
            K03H1.5 protein.
          Length = 1385

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = -1

Query: 173  FPCISRVPSSTDLWRL--NYTYQHSWW*KCRQNILCKNVKLHVIFVXILYQSCILILFF 3
            F C  +     D+ R+  N T+   WW  CR   L   +K     + I   S I ++FF
Sbjct: 1207 FSCKPKYYIHGDIERVCRNGTWSPGWWAWCRDRNLEYALKWMTALLSIFGISLIFVIFF 1265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,277,623
Number of Sequences: 27780
Number of extensions: 127977
Number of successful extensions: 270
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)