Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23n23
         (350 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   1.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   5.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   7.4  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                20   7.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   9.8  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 185 VRRVFMTLKECQNRIKSKTYXAETCHQETVDLIEAI 292
           V++  + LKE +N I  K    E C++   DL+  +
Sbjct: 509 VQKGQICLKEKENEIDFKIEVTEDCNKSFNDLLTQV 544


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 146 TKERGICMEKNCDVRRVFMTLKECQNRIKS 235
           +KE     E+N  V R+   L EC+N+ KS
Sbjct: 85  SKEVNDKKEENFIVDRLRNDLFECENKEKS 114


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 314 PYRRRNDLWLQLDPQF 267
           PY  + D+W++L   F
Sbjct: 150 PYSHQTDVWVELLKHF 165


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 37  IXTKITCNLTFLHN 78
           I   ITC L F HN
Sbjct: 160 ILKSITCALQFCHN 173



 Score = 20.2 bits (40), Expect = 7.4
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 97  HHHEC*YV*FKRHRSVDEGTRD 162
           H H   Y+  K HR +D+   D
Sbjct: 258 HSHTIIYLSAKGHRPIDDNIDD 279


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 49  SLXVYCINLVFLYF 8
           S  + CI +VFLY+
Sbjct: 351 SFYIPCIIMVFLYY 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,883
Number of Sequences: 438
Number of extensions: 1456
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)