Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23n16
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo...    31   0.20 
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    29   0.80 
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    27   2.4  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    27   3.2  
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|...    26   5.6  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    26   5.6  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    25   7.5  
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    25   7.5  
SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.9  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    25   9.9  
SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr 2|||M...    25   9.9  

>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 362 RTATSSR*HTSYHSKNAAEKKVSQHAARLRKIEMPHNPTRGYVDPASVEQHMMLG 526
           +T  S+     YHS+N    K+S   A + +  + H P  G+ + A V+    LG
Sbjct: 23  KTVISALGRRGYHSENYETSKISGKKALILENALEHVPQLGFTEDAIVQGGQALG 77


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 533 ASLQASYAVQRKQDQHILLSDYVASLFYAD 444
           A LQ  + VQ +     LL+DY++S+ YAD
Sbjct: 536 AFLQEDHIVQFQSISSALLTDYISSVLYAD 565


>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 64  YSNISTSPLSCVCYVNFKL 120
           + N STSP+S V YVN KL
Sbjct: 101 FENASTSPVSDVTYVNTKL 119


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/54 (24%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +3

Query: 498 LPLNSI*CLERCAVLRTISHRKHSV-*RRNQARRATIIMAKINLEKIIQTGTVC 656
           LPL  I C++R + +R ++  +H+V  +  +      ++ +++++ +IQT   C
Sbjct: 12  LPLRVIYCIDRASAIRCLAKSQHAVPIQVLKEVEPKKVICQVDIQHVIQTVCRC 65


>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 271

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 506 EQHMMLGEMRGTKNYKPPEAQRLKEKPGSAG 598
           EQ+ ++ ++RG   Y P + Q   +KPGS+G
Sbjct: 225 EQNWIINDIRGVC-YNPLKQQWTLDKPGSSG 254


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 544 LSTAHLSKHHMLF--NGSRINISSCRIMWHLYFTQTCRMLR 428
           L  A  S  H+ +  NG+ + +SSC  + + Y TQT  +++
Sbjct: 133 LRPAKASNKHVTYSPNGNFLAVSSCNGILYFYDTQTRELIK 173


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 431 QHAARLRKIEMPHNPTRGYVDPASVEQHMMLGEMRGTKNYKPPEAQRLK 577
           Q++  + + EMP + TR Y  PA+     +  E    K+ KPP+ +  K
Sbjct: 466 QNSLSVHESEMPPHVTRDYTQPAA-SATPVPKEKPSEKSEKPPKKKGSK 513


>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +1

Query: 16  FISVPPFLYLIIKSFVYSNI 75
           +I++PP +Y+ + S +Y N+
Sbjct: 113 YIALPPSVYVTVSSHIYENL 132


>SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 214

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +2

Query: 374 SSR*HTSYHSKNAAEKKVSQHAARLRKIEMPHNPTRGYVDPASVEQHMMLGEMRGTKNY 550
           SS  +T+YH   A+ K +S+ +     ++M  N  R       +E+H  L + +   N+
Sbjct: 29  SSDAYTAYHRLPASAKHISEISKSPEAVQMIDNIYRERQRSMKMEEHPSLLQSKYPSNF 87


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
 Frame = +2

Query: 440 ARLRKIEMPHNPTRGYVDPASVEQHMMLGEMRGTKNYKPPEAQRLKE---KPGSAGYNNY 610
           A  RK E+P N        +S  +  +        +  PP   RL +   KP S  Y + 
Sbjct: 11  APFRKQEVPQNQENQQKASSSFHESSLTSSTHSHPSNPPPPPTRLHDRSFKPVSKNYESE 70

Query: 611 GKNQP 625
           G+  P
Sbjct: 71  GRLTP 75


>SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 653 YCPRLDNFF*VDFCHNYCSPPSLVSP 576
           YCP  DN F +D       P + +SP
Sbjct: 66  YCPNCDNHFVIDAITKVEKPKAPISP 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,560,287
Number of Sequences: 5004
Number of extensions: 47827
Number of successful extensions: 137
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)