Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23n16
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0217 + 1848970-1849251,1849419-1849566,1849638-1849789,185...    32   0.36 
07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008...    31   0.63 
11_06_0533 + 24734177-24735787                                         29   2.5  
07_03_0537 - 19218461-19218982,19219482-19219868,19219993-192201...    29   3.3  
07_01_0042 - 334417-334431,334563-334688,334852-335136,335220-33...    29   3.3  

>01_01_0217 +
           1848970-1849251,1849419-1849566,1849638-1849789,
           1850146-1850328,1850690-1850765,1850956-1851033,
           1851584-1851669,1852680-1852753,1852920-1852965,
           1853211-1853320,1853600-1853774,1854501-1854749
          Length = 552

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +3

Query: 138 KLVKDKRHRSSSSLAGALDCTRSEKKLDIRASIPEVDDQFALAEARCDD 284
           +L  D   R + S+AG LD +R    LD+ AS+ ++ DQF L    C +
Sbjct: 64  ELRSDVAIRGADSVAGRLDISR----LDVSASLDQICDQFGLPSGICGE 108


>07_03_1486 + 26899479-26899549,26899861-26899989,26900649-26900834,
            26901025-26901247,26901662-26901666,26901796-26901924,
            26902697-26902894,26903138-26903356,26903461-26903699,
            26903797-26903888,26904009-26904224,26904327-26904554,
            26904631-26904722,26904806-26904899,26905475-26905567,
            26905667-26906640,26906727-26906841,26907135-26908895
          Length = 1687

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 171  SSLAGALDCTRSEKKLDIRASIP-EVDDQFALAEARCDDLQDKID 302
            + + GA D  R  ++ ++R  +P E DD+ A    +C  LQD+ID
Sbjct: 1636 NGVLGAGDGVRMPRRTELRDLVPIERDDKLARLLEQCSKLQDRID 1680


>11_06_0533 + 24734177-24735787
          Length = 536

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/46 (36%), Positives = 30/46 (65%)
 Frame = +3

Query: 165 SSSSLAGALDCTRSEKKLDIRASIPEVDDQFALAEARCDDLQDKID 302
           S S LA A   T +EK   +R+ + E+D++  +AEA+ ++LQ +I+
Sbjct: 310 SKSELAAAK--TEAEK---LRSEVAEIDEKHRMAEAKVNELQIEIE 350


>07_03_0537 -
           19218461-19218982,19219482-19219868,19219993-19220154,
           19220464-19221117,19221233-19221277,19223300-19223845,
           19223930-19224307,19224642-19225313,19225373-19225456
          Length = 1149

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 542 KNYKPPEAQRLKEKPGSAGYNNYGKNQPRK 631
           K+Y PP++ R K++ G    +N     PRK
Sbjct: 414 KSYSPPQSSRKKDQAGQGQDSNVRSKNPRK 443


>07_01_0042 -
           334417-334431,334563-334688,334852-335136,335220-335368,
           336239-336536,337030-337131,337245-337613,337973-338115,
           338334-338518,339246-339475,339734-339821,340158-340253,
           340397-340512,340604-340852,340950-341175,341411-341622
          Length = 962

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = -2

Query: 536 RASLQASYAVQRKQDQHILLSDYVASLFYADVPHAETLFFRLRSYCDNWYVI*S*LRFAN 357
           R  L  +Y    +  +HI+ +  +A LF+    +  TL  +L +    W +  + + FA+
Sbjct: 21  RTILTHTYPYPHEHSRHIMTAVIIACLFFISSDNMHTLIHKLDNNIKWWSMYVAWICFAS 80

Query: 356 LGH 348
           L H
Sbjct: 81  LYH 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,651,404
Number of Sequences: 37544
Number of extensions: 314536
Number of successful extensions: 852
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)