Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23n16
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73969-20|CAA98241.1|  643|Caenorhabditis elegans Hypothetical p...    28   6.9  
U21487-1|AAA96949.1|  643|Caenorhabditis elegans ribonucleoprote...    28   6.9  
L41729-1|AAC41575.1|  643|Caenorhabditis elegans Ro ribonucleopr...    28   6.9  
AL021479-8|CAA16325.1|  643|Caenorhabditis elegans Hypothetical ...    28   6.9  
AL022288-4|CAA18365.1|  461|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z73969-20|CAA98241.1|  643|Caenorhabditis elegans Hypothetical
           protein C12D8.11 protein.
          Length = 643

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = +1

Query: 1   GFFSDFISVPPF-----LYLIIKSFVYSNISTSPLSC 96
           GF+  F++ PP      L L +   + S +S+SPLSC
Sbjct: 460 GFYKAFVNAPPTGKRYCLALDVSGSMTSRVSSSPLSC 496


>U21487-1|AAA96949.1|  643|Caenorhabditis elegans ribonucleoprotein
           Ro autoantigenhomolog protein.
          Length = 643

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = +1

Query: 1   GFFSDFISVPPF-----LYLIIKSFVYSNISTSPLSC 96
           GF+  F++ PP      L L +   + S +S+SPLSC
Sbjct: 460 GFYKAFVNAPPTGKRYCLALDVSGSMTSRVSSSPLSC 496


>L41729-1|AAC41575.1|  643|Caenorhabditis elegans Ro
           ribonucleoprotein autoantigen protein.
          Length = 643

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = +1

Query: 1   GFFSDFISVPPF-----LYLIIKSFVYSNISTSPLSC 96
           GF+  F++ PP      L L +   + S +S+SPLSC
Sbjct: 460 GFYKAFVNAPPTGKRYCLALDVSGSMTSRVSSSPLSC 496


>AL021479-8|CAA16325.1|  643|Caenorhabditis elegans Hypothetical
           protein C12D8.11 protein.
          Length = 643

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = +1

Query: 1   GFFSDFISVPPF-----LYLIIKSFVYSNISTSPLSC 96
           GF+  F++ PP      L L +   + S +S+SPLSC
Sbjct: 460 GFYKAFVNAPPTGKRYCLALDVSGSMTSRVSSSPLSC 496


>AL022288-4|CAA18365.1|  461|Caenorhabditis elegans Hypothetical
           protein ZK1025.7 protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 347 YDQGWRTATSSR*HTSYHSKNAAEKKVSQHAARLRKIEMPHNPTRG 484
           Y + WR   ++R    YHS     KKV  +  +L  IE+   P  G
Sbjct: 177 YIEAWRAQGATRFIVFYHSSTEDTKKVLDYYEKLGLIELRPWPNIG 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,398,595
Number of Sequences: 27780
Number of extensions: 280417
Number of successful extensions: 732
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)