Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23n14
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr...    29   0.47 
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch...    26   5.8  
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    25   7.6  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   7.6  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    25   7.6  

>SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 115

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
 Frame = -2

Query: 434 VFKVGIVNCVFLIH------LFPMV*G---LVCFPNYQYPIFVFLHM 321
           V+ VG V+C FL+H       FP++     +   PN+Q+P+F F+ +
Sbjct: 44  VYLVGQVDCRFLLHHNAKNKQFPLIFVTNFITSLPNFQFPLFFFVSL 90


>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 135 INVFRMLSTRAVNPVVIIFSLF 70
           +N FR+L  R   PVVII S F
Sbjct: 39  VNAFRLLMRRFAQPVVIITSGF 60


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = -1

Query: 255 PFTCEN*YLICVHSLKPNDPPTTNNINGTPYLKV-LRLLTAINVFRMLSTRAVNPVVIIF 79
           P  CE    I V    PNDP TTN I+  P   + L  +  I      +  A NP  IIF
Sbjct: 401 PKICEKTKFIFVPG--PNDPWTTNGISLMPKHSIPLHFVNRIQRVCKHTIFASNPCRIIF 458


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 226  LCPFPQTKRSSYNK*YKRNTISKSSSLAYG-N*CISYVVYASCKSC 92
            +CP   TK+  Y + YK N +    SL  G N CI+ V +   K+C
Sbjct: 1265 ICP-EFTKQKKYYEQYKEN-LGFFDSLCIGDNECITRVYFLLLKAC 1308


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = -1

Query: 495 LYHVLFITFIAFHTSLKKLQCI*GRHS*LCFFDSFISHGLGPRLFSQLSISNFC 334
           ++ V+  TF    +   K Q   G  S    FD FI   L PR+     I  FC
Sbjct: 145 VFSVVLCTFCYVQSFFGKQQLAKGGTSGNILFDWFIGRSLNPRI-GNFDIKCFC 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,791,179
Number of Sequences: 5004
Number of extensions: 58627
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)