Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23n14
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    29   4.0  
U00040-3|AAM22033.1|  638|Caenorhabditis elegans Hypothetical pr...    28   7.0  
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    27   9.3  
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    27   9.3  
AF045645-2|AAC02609.1|  299|Caenorhabditis elegans Hypothetical ...    27   9.3  
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    27   9.3  
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    27   9.3  
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    27   9.3  

>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/69 (23%), Positives = 30/69 (43%)
 Frame = +2

Query: 194  GGSFGLREWTQIRYQFSQVKGVSKEEAEKMGLHREKTVSLDTAYEEIQKLDIDNWENKRG 373
            G  F L +W  + Y+    + +    A+K+ L RE+ V       E Q+ + + W+    
Sbjct: 1118 GQEFVLIKWKSLGYEEVTWEPIEMIPADKVELWRERQVIDPAKIREKQRPEPEEWKKMST 1177

Query: 374  PRPWEINES 400
             + W+   S
Sbjct: 1178 SKVWKNGNS 1186


>U00040-3|AAM22033.1|  638|Caenorhabditis elegans Hypothetical
           protein C18H2.3 protein.
          Length = 638

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +3

Query: 312 WILHMKKYKNWILIIGKTNEALDHGK*MNQKNTINYAYLKYIVVFLKKCEML 467
           +++   KYKN +      N  L   + M  K+T+ Y Y  ++V+ +KKCE L
Sbjct: 501 YLVEKVKYKNTVY-----NTVLQWSEAM-AKSTMPYLYGAHVVISMKKCENL 546


>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = -2

Query: 512  TISLRNCTMCFLLPS*HFTLL*KNYNVFKVGIVNCVFLIHLFPMV*GLVCFPNYQYPIFV 333
            TI+ RN T+  L+     T++   +  F   I+  +FL+ LF    G++ FP  +Y + V
Sbjct: 1318 TIASRNSTLKMLM----LTVIMSMFRSFF--IITALFLLVLFYAYTGVILFPMVKYGMAV 1371

Query: 332  FLHMQY 315
              H+ +
Sbjct: 1372 SKHVNF 1377


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = -2

Query: 512  TISLRNCTMCFLLPS*HFTLL*KNYNVFKVGIVNCVFLIHLFPMV*GLVCFPNYQYPIFV 333
            TI+ RN T+  L+     T++   +  F   I+  +FL+ LF    G++ FP  +Y + V
Sbjct: 1352 TIASRNSTLKMLM----LTVIMSMFRSFF--IITALFLLVLFYAYTGVILFPMVKYGMAV 1405

Query: 332  FLHMQY 315
              H+ +
Sbjct: 1406 SKHVNF 1411


>AF045645-2|AAC02609.1|  299|Caenorhabditis elegans Hypothetical
           protein K02D7.5 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +2

Query: 167 GVPFILFVVGGSFGLR 214
           GVPF++ V+GGSF LR
Sbjct: 42  GVPFLMGVLGGSFWLR 57


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            a protein.
          Length = 1562

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = -2

Query: 512  TISLRNCTMCFLLPS*HFTLL*KNYNVFKVGIVNCVFLIHLFPMV*GLVCFPNYQYPIFV 333
            TI+ RN T+  L+     T++   +  F   I+  +FL+ LF    G++ FP  +Y + V
Sbjct: 1410 TIASRNSTLKMLM----LTVIMSMFRSFF--IITALFLLVLFYAYTGVILFPMVKYGMAV 1463

Query: 332  FLHMQY 315
              H+ +
Sbjct: 1464 SKHVNF 1469


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            c protein.
          Length = 1913

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = -2

Query: 512  TISLRNCTMCFLLPS*HFTLL*KNYNVFKVGIVNCVFLIHLFPMV*GLVCFPNYQYPIFV 333
            TI+ RN T+  L+     T++   +  F   I+  +FL+ LF    G++ FP  +Y + V
Sbjct: 1463 TIASRNSTLKMLM----LTVIMSMFRSFF--IITALFLLVLFYAYTGVILFPMVKYGMAV 1516

Query: 332  FLHMQY 315
              H+ +
Sbjct: 1517 SKHVNF 1522


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            d protein.
          Length = 1861

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = -2

Query: 512  TISLRNCTMCFLLPS*HFTLL*KNYNVFKVGIVNCVFLIHLFPMV*GLVCFPNYQYPIFV 333
            TI+ RN T+  L+     T++   +  F   I+  +FL+ LF    G++ FP  +Y + V
Sbjct: 1382 TIASRNSTLKMLM----LTVIMSMFRSFF--IITALFLLVLFYAYTGVILFPMVKYGMAV 1435

Query: 332  FLHMQY 315
              H+ +
Sbjct: 1436 SKHVNF 1441


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,188,055
Number of Sequences: 27780
Number of extensions: 323327
Number of successful extensions: 768
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)