Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23n10
(567 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132860-6|CAB60526.1| 373|Caenorhabditis elegans Hypothetical ... 32 0.25
AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome re... 31 0.76
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 29 2.3
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 28 4.1
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 28 4.1
Z99772-1|CAB16921.1| 794|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z75550-14|CAA99932.1| 794|Caenorhabditis elegans Hypothetical p... 28 5.4
Z68120-3|CAA92201.1| 266|Caenorhabditis elegans Hypothetical pr... 28 5.4
AF047658-5|AAC04416.3| 434|Caenorhabditis elegans Hypothetical ... 28 5.4
AL021474-5|CAA16307.2| 673|Caenorhabditis elegans Hypothetical ... 25 6.0
U40942-4|AAC47069.2| 486|Caenorhabditis elegans Hypothetical pr... 27 7.1
U40942-3|AAU05564.1| 487|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z81552-3|CAB04486.1| 470|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z70212-6|CAA94166.1| 336|Caenorhabditis elegans Hypothetical pr... 27 9.4
>AL132860-6|CAB60526.1| 373|Caenorhabditis elegans Hypothetical
protein Y56A3A.9 protein.
Length = 373
Score = 32.3 bits (70), Expect = 0.25
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +1
Query: 199 QPDPTGLPGAKLP--DPYPVPDVKQSLTLGTMNFKNIALYGTNEFRLNYVKAD-IGAMEA 369
QP P LPG + P P P+P + L + ++ I + TNE RL + D + M
Sbjct: 27 QPPPQDLPGLQDPPLTPLPLPPLLCPHPLSLLTWEGIQIPTTNECRLLGLHFDSMLCMRE 86
Query: 370 HAVMTLEKLQARGN 411
H ++LQ++ N
Sbjct: 87 HHAQIKKRLQSQLN 100
>AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 1 protein.
Length = 981
Score = 30.7 bits (66), Expect = 0.76
Identities = 10/38 (26%), Positives = 25/38 (65%)
Frame = +1
Query: 100 QEIPEEVSSEDEKLSEGEKKLSHNILAILEHYKQPDPT 213
+++PE+ + E++SE ++KL ++ +++ +PD T
Sbjct: 20 KKVPEKAEPKKEEMSEEDQKLEEDLNLLVQRLSEPDTT 57
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 136 KLSEGEKKLSHNILAILEHYKQPDPTGLPGAKLPDPYPVPDVK 264
K S+GEKK+ N + + P P P + P+P P P V+
Sbjct: 2795 KNSKGEKKVKENTAPVQQ---APVPVSPPREETPEPTPSPPVR 2834
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 106 IPEEVSSEDEKLSEGEKKLSHNILAILEHYKQPDPTGLPGAKLPDP 243
+P + S +S + L+H +A + P P P KLPDP
Sbjct: 235 VPPPIPSRAPVMSPVQSPLTHPPVAPMPRCPPPLPPRTPSMKLPDP 280
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 106 IPEEVSSEDEKLSEGEKKLSHNILAILEHYKQPDPTGLPGAKLPDP 243
+P + S +S + L+H +A + P P P KLPDP
Sbjct: 235 VPPPIPSRAPVMSPVQSPLTHPPVAPMPRCPPPLPPRTPSMKLPDP 280
>Z99772-1|CAB16921.1| 794|Caenorhabditis elegans Hypothetical
protein H05L14.1 protein.
Length = 794
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +1
Query: 142 SEGEKKLSHNILAILEHYKQPDPTGLPGAKLPDPYPVPD-VKQSLTLGTMN 291
S +K L+ + P G P A P P PV D K+ T+ TM+
Sbjct: 16 SNRKKNLTKELSREASRMGAPSQMGAPSAVTPIPVPVSDPTKKGTTMSTMS 66
>Z75550-14|CAA99932.1| 794|Caenorhabditis elegans Hypothetical
protein H05L14.1 protein.
Length = 794
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +1
Query: 142 SEGEKKLSHNILAILEHYKQPDPTGLPGAKLPDPYPVPD-VKQSLTLGTMN 291
S +K L+ + P G P A P P PV D K+ T+ TM+
Sbjct: 16 SNRKKNLTKELSREASRMGAPSQMGAPSAVTPIPVPVSDPTKKGTTMSTMS 66
>Z68120-3|CAA92201.1| 266|Caenorhabditis elegans Hypothetical
protein T24C2.3 protein.
Length = 266
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 256 LELGMDLVV*-LPAVPWDPAVYNAPE*PRYYD*VFFRLPKVFHLHS 122
L+LG DLV A+P Y+ PE P D V +++P+ FH ++
Sbjct: 153 LKLGDDLVKRNTAALPLSFDSYDVPELPASCDFVSYQMPQQFHYYT 198
>AF047658-5|AAC04416.3| 434|Caenorhabditis elegans Hypothetical
protein K03H6.5 protein.
Length = 434
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = +1
Query: 58 LCLVLVILFQFRNCQEIPEEVSSEDEKLSEGEKKLSHNILAIL 186
L + L+ L + R+ +E+ ++ ++E EKK++H +LAI+
Sbjct: 242 LNISLIRLVKRRHSEELLVRNAAGPSSMAEQEKKMTHTVLAIV 284
>AL021474-5|CAA16307.2| 673|Caenorhabditis elegans Hypothetical
protein Y32F6A.2 protein.
Length = 673
Score = 25.4 bits (53), Expect(2) = 6.0
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -1
Query: 300 VFKIHSSKSE*LFDVWNWVWIW 235
VF +SE D W WVW W
Sbjct: 327 VFTAFFYQSEGYEDKWMWVWSW 348
Score = 20.6 bits (41), Expect(2) = 6.0
Identities = 4/16 (25%), Positives = 10/16 (62%)
Frame = -1
Query: 249 WVWIW*FSSRQSRGIR 202
W+W+W ++ + +R
Sbjct: 342 WMWVWSWADAAAHALR 357
>U40942-4|AAC47069.2| 486|Caenorhabditis elegans Hypothetical
protein K02E10.4a protein.
Length = 486
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 417 GVVAACLQFFESHHGVGLHCSDIGLNVI 334
G+ C Q S G +HC+D+GL I
Sbjct: 163 GLPMKCSQIARSCPGENMHCADVGLGYI 190
>U40942-3|AAU05564.1| 487|Caenorhabditis elegans Hypothetical
protein K02E10.4b protein.
Length = 487
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 417 GVVAACLQFFESHHGVGLHCSDIGLNVI 334
G+ C Q S G +HC+D+GL I
Sbjct: 164 GLPMKCSQIARSCPGENMHCADVGLGYI 191
>Z81552-3|CAB04486.1| 470|Caenorhabditis elegans Hypothetical
protein F56G4.4 protein.
Length = 470
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 100 QEIPEEVSSEDEKLSEGEKKLSHNILAILEHYKQPDPTGLPGAKLPDPYPVPDV 261
+++ +E S EDE+ E L + EH P P L +L +P +P++
Sbjct: 321 EDVSDEESDEDEEEFEIIGTPEREALVLREHSSTPPPEELQ-EQLEEPPKIPEI 373
>Z70212-6|CAA94166.1| 336|Caenorhabditis elegans Hypothetical
protein R04D3.8 protein.
Length = 336
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 61 CLVLVILFQFRN-CQEIPEEVSS 126
CL LV+LFQFR +P EV S
Sbjct: 57 CLCLVVLFQFRQVSSNVPVEVRS 79
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,381,810
Number of Sequences: 27780
Number of extensions: 248388
Number of successful extensions: 789
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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