Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23n08
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    27   1.7  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    27   2.3  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    25   6.9  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   9.1  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    25   9.1  
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    25   9.1  

>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 181 WLIVNPTEWM*ILSITIVKSNGTLVQQKTISLRNAEF 291
           W +VNP  W+    I + KS G+ V  +TI+   +EF
Sbjct: 446 WQVVNPQTWLIAPEINVNKSFGS-VNNETITEMVSEF 481


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
 Frame = +3

Query: 222 DYYRKIQRNFSTTKDNLASKCRICLNSGCVLITDNDN-TKQLLETLQVLGDINIDEEKAW 398
           DY +++ +   TT  +L + C     S  V+  + DN  K  L+  Q+L D   D E A+
Sbjct: 60  DYAKRMAKLSRTTFSSLETGC--LKESVQVMKAEVDNMAKSHLQISQLLQD---DVENAF 114

Query: 399 PKYLCEMCYKFLMIVIEFRNVAKQSLEILKLPVKEE 506
            +Y   +  K  MIV     V K  L   +  VK +
Sbjct: 115 TRYAASLKDKKKMIVSGIEKVHKDKLSKHQALVKAQ 150


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 157 WHYFIK*KWLIVNPTEWM*IL-SITIVKSNGTLV 255
           ++YF++  WL +NPT  + +L S   +K    L+
Sbjct: 252 YYYFVRLPWLFLNPTTLLFLLISFVYIKPARLLI 285


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 21/83 (25%), Positives = 38/83 (45%)
 Frame = +3

Query: 141 QFLKMLALFYQMKMAHRQSNRMDVDFIDYYRKIQRNFSTTKDNLASKCRICLNSGCVLIT 320
           +FLK +   Y     H+Q NR+++    Y   +  +     DN  +   +       L+ 
Sbjct: 395 KFLKQIIHAY----THKQDNRLNI-IQGYLDLVHLSDQDQYDNWFTSTILTY-----LVI 444

Query: 321 DNDNTKQLLETLQVLGDINIDEE 389
           DND  K LL ++ +  D++ DE+
Sbjct: 445 DNDQRKYLLCSIPLFQDMDNDED 467


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +3

Query: 462 AKQSLEILKLPVKEEIFETQ 521
           +K+ LE+ KLPV+ E F+++
Sbjct: 64  SKEPLEVKKLPVENEYFDSK 83


>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 173 NENGSSSIQPNGC 211
           N+NG+S +QP GC
Sbjct: 125 NDNGASVLQPEGC 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,026
Number of Sequences: 5004
Number of extensions: 45131
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)