Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23n08
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   2.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.9  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   9.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.9  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = -1

Query: 198 WIDDEPF--SFDKIMPTFLKTE 139
           W+    F  S+D++MP +LK+E
Sbjct: 172 WVQQGAFGWSWDEVMPYYLKSE 193


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -2

Query: 83  FIICYLLFTYFDSLMII 33
           +++CY ++ YF  L +I
Sbjct: 216 YLVCYGIWVYFVPLFLI 232


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -2

Query: 83  FIICYLLFTYFDSLMII 33
           +++CY ++ YF  L +I
Sbjct: 92  YLVCYGIWVYFVPLFLI 108


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 245 EL*YNKRQSRFEMQNLLKFGL 307
           +L Y     R EM+N++KF L
Sbjct: 200 DLNYRNSDVREEMKNIMKFWL 220


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,601
Number of Sequences: 438
Number of extensions: 3157
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)