Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23m23
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1112 + 8808544-8808695,8808818-8808961,8809302-8809380,880...    34   0.090
04_01_0267 + 3584117-3584922,3585331-3585361                           29   3.4  
02_05_0978 - 33242938-33242988,33243729-33243911,33244458-332445...    29   4.5  
07_03_0943 - 22778877-22780970,22781376-22781480,22781481-227820...    28   5.9  

>01_01_1112 +
           8808544-8808695,8808818-8808961,8809302-8809380,
           8809477-8809555,8810338-8810377,8810455-8810589,
           8810901-8811038,8811596-8811881
          Length = 350

 Score = 34.3 bits (75), Expect = 0.090
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -1

Query: 381 CVSPTAQVQTHPRFHKLLVFQSKQARTCVYFLFLVYL--KVSRLPNLRSLDD 232
           C SP  + +         +F +  +R C +F FL++L    S L NLRSL D
Sbjct: 57  CTSPAKKTELEMLGMDASIFDATSSRCCFFFFFLLFLFFVPSSLTNLRSLQD 108


>04_01_0267 + 3584117-3584922,3585331-3585361
          Length = 278

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 548 IKLSMDPDCSVCCTDMIS 495
           I+LS+ P C++CCT  +S
Sbjct: 254 IELSLSPSCTICCTPRLS 271


>02_05_0978 -
           33242938-33242988,33243729-33243911,33244458-33244520,
           33244656-33246083
          Length = 574

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 560 YSFNIKLSMDPDCSVCCTDMISRTFVKIIQTLIAFLM 450
           Y FN+KL +DPD   C  + + +  V + Q +I  L+
Sbjct: 307 YFFNLKLQIDPDAFACAIEKLPQ-LVSLHQNIILKLV 342


>07_03_0943 -
           22778877-22780970,22781376-22781480,22781481-22782059,
           22782149-22782187,22782340-22782372
          Length = 949

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +3

Query: 264 KLLDKQEIENKHRCELVLIEIPVTYEN-VDEFVPAL-WETHTPKLMIHVGVSSIANELTL 437
           K++ K++ ++KH  +L + ++P  YE+ V   VP+    THT    IH   ++  ++   
Sbjct: 713 KMVLKEKSQDKHVIDLNIPQVPSDYESAVSYIVPSSDKNTHTMDRSIHSSETNRMDDCLP 772

Query: 438 EVQAHKKG 461
           ++ A   G
Sbjct: 773 DINASCNG 780


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,595,415
Number of Sequences: 37544
Number of extensions: 320364
Number of successful extensions: 806
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)