Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23m21
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.9  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    26   5.0  
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch...    25   8.8  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   8.8  
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    25   8.8  

>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = -3

Query: 225 TGHTPASTYFSRTKN-NNIVNTTATAWSSLIFNMKT*SCFEFYCYFVYNKVLTLIYKVTN 49
           TG+T   T   R ++  N +   AT   SLIF      CF  Y   VY      I    N
Sbjct: 303 TGNTAYYTIHERERDPKNAMIQAATQAVSLIFTEPIVVCFTLYLTVVY------IINYIN 356

Query: 48  IEGQPL 31
            EG P+
Sbjct: 357 FEGYPI 362


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 303 QIISLRALESVLTQSPNINETRKLKSTTNISVNTRKNSSNHENLNFITN*N 455
           Q I+  ++    + +P   +T    +T+ + V+T KNS+  ENLN I   N
Sbjct: 492 QTITESSVAKTKSTTPKSTDTPTEATTSPVKVST-KNSNTTENLNGINESN 541


>SPCC1442.09 |trp3||anthranilate synthase component
           I|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 271 CVVI*TWFYIDATVFYRAYSGQYVFFSHKEQQHSE 167
           C+ I T  Y D TV+ +A  G  VF S ++ ++ E
Sbjct: 429 CIAIRTMVYKDGTVYLQA-GGGIVFDSDEQDEYVE 462


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 257 SDDDTVSSISPMSYSANN 310
           SDDDT+SS++ M Y  N+
Sbjct: 23  SDDDTMSSLTRMIYDKNS 40


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 590 NLSFSHKTIIKGRL 549
           N+ FSHKT++K RL
Sbjct: 10  NIGFSHKTVLKRRL 23


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,614,702
Number of Sequences: 5004
Number of extensions: 48767
Number of successful extensions: 173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)