Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23m19
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    26   5.4  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    26   5.4  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.2  
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    25   7.2  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   7.2  
SPCC4B3.18 |||phosphopantothenate-cysteine ligase|Schizosaccharo...    25   7.2  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    25   9.5  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    25   9.5  
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe...    25   9.5  

>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 226 GNSLRFPWMLAMLWTELYHEVLCV 297
           G S RF W++  LW+ +Y  +LC+
Sbjct: 205 GRSARFEWVVCFLWS-IYICLLCL 227


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
 Frame = -2

Query: 338 FITGFITLAL*TKITQSTS-----WYSSVHNIANI 249
           FI  F T  L  KI+  T+     WYSS+H  AN+
Sbjct: 486 FIASFRTFTLAIKISLLTNKVYDMWYSSLHGKANL 520


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 113 QH*DKHSTLRNKFSQNFSWIKSKLYFNENKIKNI 12
           +H    S   N+ + NFS I S LY  ++  KN+
Sbjct: 340 RHNSSQSFYGNRSTTNFSIINSGLYLKKDAAKNL 373


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 121 IIISTRTNIPLYEINSHK 68
           +++S + N PLY +N HK
Sbjct: 229 VMVSRKENSPLYTVNRHK 246


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +2

Query: 173 QLSFYSVGVQISIRAI 220
           +LSF+S G+QIS++ I
Sbjct: 167 ELSFFSTGIQISVQGI 182


>SPCC4B3.18 |||phosphopantothenate-cysteine
           ligase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 100 NIPLYEINSHKISHGSNQNYISMK 29
           +IP  E++ HKI  GS  N + +K
Sbjct: 185 HIPPKELSEHKIQSGSGSNKLEVK 208


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 137 SQIAMNYHQH*DKHSTLRNKFSQNFSWIKS 48
           S++A+ YH   DKHS + +    +  W+K+
Sbjct: 449 SRVAVGYHFIHDKHSLITDVVEIDRHWLKA 478


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -2

Query: 290 STSWYSSVHNIANI 249
           STS YSS HNI NI
Sbjct: 255 STSTYSSEHNIGNI 268


>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 460

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 86  RNKFSQNFSWIKSKLYFNENKI 21
           + KF QN  WI  + YF  N +
Sbjct: 335 KTKFHQNIDWIALEKYFEVNAL 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,487,767
Number of Sequences: 5004
Number of extensions: 47821
Number of successful extensions: 112
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)