Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23m19
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1138 + 30684014-30684386,30684480-30684865,30684870-306849...    28   7.4  
04_02_0006 + 8455219-8457469,8457560-8457924                           27   9.8  

>03_05_1138 +
           30684014-30684386,30684480-30684865,30684870-30684962,
           30684963-30685108,30685211-30685454,30685562-30685666,
           30685774-30685956,30686052-30686738
          Length = 738

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 275 SSVHNIANIHGNRRLFPIRWPVYLSALQRNRS*VALSYNT 156
           + V+    I   R L  I  P YL+ALQ+  S V +SY++
Sbjct: 351 NGVNEDNTIIDRRGLMTIHMPAYLNALQKGVSTVMISYSS 390


>04_02_0006 + 8455219-8457469,8457560-8457924
          Length = 871

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -2

Query: 299 ITQSTSWYSSVHNIANIH 246
           I ++T+W+SSVH I++ H
Sbjct: 561 ILKATNWFSSVHTISSTH 578


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,629,593
Number of Sequences: 37544
Number of extensions: 253250
Number of successful extensions: 523
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)