Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23m19
         (651 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT025232-1|ABF17923.1|  993|Drosophila melanogaster FI01005p pro...    29   7.2  
AY122223-1|AAM52735.1|  993|Drosophila melanogaster RE21150p pro...    29   7.2  
AF289998-1|AAG02463.1|  993|Drosophila melanogaster thyroid horm...    29   7.2  
AE014296-1393|AAF50469.2|  993|Drosophila melanogaster CG7999-PA...    29   7.2  

>BT025232-1|ABF17923.1|  993|Drosophila melanogaster FI01005p
           protein.
          Length = 993

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = -2

Query: 389 LLRRAKMYNNTIFLSFIFITGFITLAL*TKITQSTSW-----YSSVHNIANIHGNRRL 231
           +L+R K Y+NT     I   GF+TL+     +  T W     +   H I  +H  +R+
Sbjct: 271 MLQRLKKYSNTRLFYEIIRAGFLTLSNVADTSPDTMWGAFMFFKMPHIIKQLHALQRI 328


>AY122223-1|AAM52735.1|  993|Drosophila melanogaster RE21150p
           protein.
          Length = 993

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = -2

Query: 389 LLRRAKMYNNTIFLSFIFITGFITLAL*TKITQSTSW-----YSSVHNIANIHGNRRL 231
           +L+R K Y+NT     I   GF+TL+     +  T W     +   H I  +H  +R+
Sbjct: 271 MLQRLKKYSNTRLFYEIIRAGFLTLSNVADTSPDTMWGAFMFFKMPHIIKQLHALQRI 328


>AF289998-1|AAG02463.1|  993|Drosophila melanogaster thyroid hormone
           receptor-associatedprotein TRAP100 protein.
          Length = 993

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = -2

Query: 389 LLRRAKMYNNTIFLSFIFITGFITLAL*TKITQSTSW-----YSSVHNIANIHGNRRL 231
           +L+R K Y+NT     I   GF+TL+     +  T W     +   H I  +H  +R+
Sbjct: 271 MLQRLKKYSNTRLFYEIIRAGFLTLSNVADTSPDTMWGAFMFFKMPHIIKQLHALQRI 328


>AE014296-1393|AAF50469.2|  993|Drosophila melanogaster CG7999-PA
           protein.
          Length = 993

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = -2

Query: 389 LLRRAKMYNNTIFLSFIFITGFITLAL*TKITQSTSW-----YSSVHNIANIHGNRRL 231
           +L+R K Y+NT     I   GF+TL+     +  T W     +   H I  +H  +R+
Sbjct: 271 MLQRLKKYSNTRLFYEIIRAGFLTLSNVADTSPDTMWGAFMFFKMPHIIKQLHALQRI 328


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,701,622
Number of Sequences: 53049
Number of extensions: 477160
Number of successful extensions: 1152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)