Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23m19
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           25   0.63 
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   2.6  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   5.9  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 118 IISTRTNIPLYEINSHKISHGSNQNYISMKTKLKIFLY 5
           +I T +N+ L   N  K+ H  +QN   +  KL ++LY
Sbjct: 473 VIGT-SNLSLVFPNDIKVDHEYDQNVWVLSNKLAMYLY 509


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -2

Query: 194 QRNRS*VALSYNTKPLII*SQIAMNYHQH*DKHSTLRNKFSQNFSWIKSKLYFNENKIKN 15
           +R+R       + +P II S      H + +      NK++ N +    KLY+ +N I N
Sbjct: 65  ERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYY-KNYIIN 123

Query: 14  I 12
           I
Sbjct: 124 I 124



 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = -3

Query: 118 IISTRTNIPLYEINSHKISHGSNQNYISMKTKLKIF 11
           IIS+ +N  ++  N++K ++ +  NY +     K++
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKLY 116


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -2

Query: 122 NYHQH*DKHSTLRNKFSQNFSWIKSKLYFNENKIKNI 12
           NY  + + ++   N ++ N++    KLY+N   I+ I
Sbjct: 328 NYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIINIEQI 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,166
Number of Sequences: 438
Number of extensions: 3541
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)