Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23m18
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 261 5e-71
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 137 2e-33
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 135 5e-33
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 130 2e-31
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 29 0.45
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 28 1.0
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 3.1
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 26 4.2
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 5.5
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 26 5.5
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 26 5.5
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 5.5
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 25 7.3
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 25 7.3
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc... 25 7.3
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 25 9.6
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 261 bits (640), Expect = 5e-71
Identities = 117/172 (68%), Positives = 135/172 (78%)
Frame = +3
Query: 141 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERINVYYNEASGGKYV 320
MREIVHIQAGQCGNQ+GA FW I+DEHG+D+ G Y G S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 321 PRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 500
PRAV+VDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVV
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120
Query: 501 RKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPS 656
R+EAE CD LQGFQ KIREEYPDR+M TFSV P+
Sbjct: 121 RREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPA 172
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 137 bits (331), Expect = 2e-33
Identities = 58/173 (33%), Positives = 105/173 (60%), Gaps = 2/173 (1%)
Frame = +3
Query: 144 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERINVYYNEASGGKYVP 323
REI+ +QAGQCGNQIG++FW+ + EHGI G + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 324 RAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDV 497
RA+++DLEP ++++ S +G ++ P+N + ++ GAGNNWA G Y+ + + ++D+
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121
Query: 498 VRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPS 656
+ +EA+G D L+GF ++ + YP +I+ T+SV P+
Sbjct: 122 IDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPN 174
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 135 bits (327), Expect = 5e-33
Identities = 67/174 (38%), Positives = 94/174 (54%), Gaps = 2/174 (1%)
Frame = +3
Query: 141 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLER--INVYYNEASGGK 314
MREI+ I GQ G QIG WE+ EHGI G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 315 YVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 494
YVPR++ VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 495 VVRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPS 656
+R+ A+ C LQGF ++ EY + FSV P+
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPA 174
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 130 bits (314), Expect = 2e-31
Identities = 64/178 (35%), Positives = 96/178 (53%), Gaps = 6/178 (3%)
Frame = +3
Query: 141 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLER------INVYYNEA 302
MRE++ + GQ G QIG WE+ EHGI G + +S++ +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 303 SGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 482
GK+VPR++ VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++D
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120
Query: 483 SVLDVVRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPS 656
SVL+ +R+ A+ C LQGF ++ EY + FSV P+
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPA 178
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 29.5 bits (63), Expect = 0.45
Identities = 29/89 (32%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Frame = -1
Query: 579 YQIQYLLPENELAENPADNRSLLLLF*LHPVPNQPVQPPLCNVLSPSYSPPQ---TVRRR 409
Y YL P +A +P N L H P P PL N +SP Y P R
Sbjct: 26 YTGPYLTPSGTMAYHPG-NAPLFTQAPPHTNPQGPPPFPLFNSISPVYDPATGRLLYRNV 84
Query: 408 SCPVGRFA-QTARNGRSPWFQAQGPPSQL 325
+ V A NG + + GPPSQL
Sbjct: 85 NTQVSHTAIPNPANGYAAVY--GGPPSQL 111
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 433 PAPDCPKTKLSGRKICPNGPERTESMVPGSRS 338
P+ PK L R I PNGPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 375 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 476
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -2
Query: 209 YFPELCSDLIPALTRLDVDDFPHDCTKNLEPPESN 105
+F E+ + P +LD+DD + + P E+N
Sbjct: 36 FFQEIIHSISPDTFQLDIDDILYKIYSKIPPEENN 70
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 106 FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 264
F S S S +STS RV++ ++ SSG + T+ + V +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 444 AKGHYTEGAELVDSVLDVVRKEAEGCDCLQ 533
A+GH G ELV + D +RK++E L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 573 IQYLLPENELAENPADNRSLL 511
+QY+L +NEL NP + ++L
Sbjct: 342 VQYILEQNELGRNPYNTTNVL 362
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 106 FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 264
F S S S +STS RV++ ++ SSG + T+ + V +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 553 LWEEVLDLVWGLF-*FPKSVKSIQIVL*IRF 642
LW V++++WGL F +V S++ ++ +RF
Sbjct: 98 LWFSVMNILWGLMTIFSFAVHSVRALMILRF 128
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 7.3
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = -3
Query: 166 AWMWTISLMIALKIWNPPNRI 104
AW+W ++LM+ + PN++
Sbjct: 458 AWLWFMALMLLFPSYQNPNKV 478
>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 483 NQPVQPPLCNVLSPSYSPPQT 421
N+P +PP+ N + PPQT
Sbjct: 86 NEPAKPPIPNAATKPTFPPQT 106
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 25.0 bits (52), Expect = 9.6
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 5/110 (4%)
Frame = +3
Query: 183 QIGAKFWEVISDEHGIDATGAYSGDSDLQLERINVYYNEASGGKYV-----PRAVMVDLE 347
QIG ++D IDA A G SD QL+ I+ + E + PR++++ E
Sbjct: 742 QIGCPVPCEVADLDIIDAILARVGASDSQLKGISTFMAEMLETATILRAATPRSLIIIDE 801
Query: 348 PGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 497
G S G FG + + Q G +A HY E +L + + V
Sbjct: 802 LGRGTSTTDG-FGLAWAITEHIVTQIGCFCLFAT-HYHEMTKLSEEITTV 849
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,838,662
Number of Sequences: 5004
Number of extensions: 59582
Number of successful extensions: 194
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -