Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23m17
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...   186   2e-48
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...   186   2e-48
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    25   5.0  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   6.7  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    25   8.8  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  186 bits (453), Expect = 2e-48
 Identities = 82/126 (65%), Positives = 106/126 (84%)
 Frame = +1

Query: 136 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLXPKKXGDDIAKATSDWKGLKITX 315
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGL PKK G+DIAKAT DWKGL++T 
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 316 QLTVQNRQAQIAVVPSAAALIIRXLKEPPRDRKKQKNIKHNGNISLEXVIXIAKIMRNRS 495
           +LT+QNRQA ++VVPSA+AL+I+ LKEP RDRKK KN+ H+GN+SL+ +I +A+ MR +S
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120

Query: 496 MARYLS 513
           +A+ LS
Sbjct: 121 LAKELS 126


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  186 bits (453), Expect = 2e-48
 Identities = 82/126 (65%), Positives = 106/126 (84%)
 Frame = +1

Query: 136 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLXPKKXGDDIAKATSDWKGLKITX 315
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGL PKK G+DIAKAT DWKGL++T 
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 316 QLTVQNRQAQIAVVPSAAALIIRXLKEPPRDRKKQKNIKHNGNISLEXVIXIAKIMRNRS 495
           +LT+QNRQA ++VVPSA+AL+I+ LKEP RDRKK KN+ H+GN+SL+ +I +A+ MR +S
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120

Query: 496 MARYLS 513
           +A+ LS
Sbjct: 121 LAKELS 126


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 15/63 (23%), Positives = 28/63 (44%)
 Frame = +1

Query: 304 KITXQLTVQNRQAQIAVVPSAAALIIRXLKEPPRDRKKQKNIKHNGNISLEXVIXIAKIM 483
           K + Q ++ N +    V  ++  L    LKE  +D++K ++       S   +   A+  
Sbjct: 23  KPSQQASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQKFSNPKISASARKR 82

Query: 484 RNR 492
           RNR
Sbjct: 83  RNR 85


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 215 DDVAPTSPPTHRKFTILI 162
           D++A T PP HRK  IL+
Sbjct: 249 DELAKTLPPYHRKNLILV 266


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 417 LFTVTRXLLKGSDDKGCCRGNNSYLGLSVLNCQLXS 310
           +FT+ R  LK   +   CR N +  GLS   C   S
Sbjct: 805 VFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTCNANS 840


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,868,057
Number of Sequences: 5004
Number of extensions: 33099
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)