Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23m17
(513 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1026 + 30214437-30214937 186 9e-48
02_05_0416 + 28791512-28792012 182 1e-46
03_06_0776 - 36176390-36177589 29 2.9
06_03_1069 - 27345207-27345488,27345746-27346078,27346252-273470... 28 5.1
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488... 28 5.1
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424... 27 8.8
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 27 8.8
>04_04_1026 + 30214437-30214937
Length = 166
Score = 186 bits (453), Expect = 9e-48
Identities = 89/127 (70%), Positives = 108/127 (85%), Gaps = 1/127 (0%)
Frame = +1
Query: 136 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLXPKKXGDDIAKATS-DWKGLKIT 312
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGL PKK G+DIAK T+ DWKGL++T
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
Query: 313 XQLTVQNRQAQIAVVPSAAALIIRXLKEPPRDRKKQKNIKHNGNISLEXVIXIAKIMRNR 492
+LTVQNRQA+++VVPSAAAL+I+ LKEP RDRKK KNIKH+GNISL+ VI IA+IMRNR
Sbjct: 61 VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNR 120
Query: 493 SMARYLS 513
SMA+ ++
Sbjct: 121 SMAKEMA 127
>02_05_0416 + 28791512-28792012
Length = 166
Score = 182 bits (444), Expect = 1e-46
Identities = 87/127 (68%), Positives = 107/127 (84%), Gaps = 1/127 (0%)
Frame = +1
Query: 136 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLXPKKXGDDIAKATS-DWKGLKIT 312
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGL PKK G+DIAK T+ DWKGL++T
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
Query: 313 XQLTVQNRQAQIAVVPSAAALIIRXLKEPPRDRKKQKNIKHNGNISLEXVIXIAKIMRNR 492
+LTVQNRQA+++VVPSAAAL+I+ LKEP RDRKK KNIKH+GNISL+ VI IA++MR R
Sbjct: 61 VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARVMRPR 120
Query: 493 SMARYLS 513
SMA+ ++
Sbjct: 121 SMAKEMA 127
>03_06_0776 - 36176390-36177589
Length = 399
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +1
Query: 418 QKNIKHNGNISLEXVIXIAKIMRNRSMARY 507
+K+I++ G++ LE + K+M +RSM RY
Sbjct: 113 EKSIQNIGSLELERNAAVEKLMSSRSMHRY 142
>06_03_1069 -
27345207-27345488,27345746-27346078,27346252-27347041,
27347153-27347351,27347522-27347667,27347823-27348094,
27348161-27348262,27348351-27348470,27348576-27348729,
27348986-27349114,27349554-27349900
Length = 957
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -1
Query: 153 VKLRGHFVDYLVQLYTIITLNPNGWVWIPQ 64
V LR H L L + +P W+WI Q
Sbjct: 81 VSLRSHLASVLQSLSQVRPRSPASWIWISQ 110
>04_04_1551 -
34348110-34348225,34348468-34348606,34348658-34348896,
34349042-34349140,34349207-34350188,34350737-34350832,
34350936-34351064,34351253-34351332,34351420-34351661,
34351743-34352692
Length = 1023
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 175 NLRCVGGEVGATSSLAPKIGPLGLXPKKXGDDIA 276
N +C G E G S AP++ PLG+ P K G+ IA
Sbjct: 736 NSKCAGAE-GINS--APRVTPLGIRP-KGGESIA 765
>04_04_1574 - 34536744-34537136,34541247-34541405,34541497-34542411,
34543642-34543731,34544324-34544390,34544483-34544676,
34544770-34545510,34545596-34545661,34545783-34545908,
34545978-34546073,34546153-34546521,34546602-34546724,
34546802-34546906,34547394-34547531,34547665-34547760,
34548018-34548275
Length = 1311
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -3
Query: 286 LWPWQCHHPPF*EXDQEDRF*GPKMMWHRLPRRHIA 179
+W C H P+ E D E R GP L R I+
Sbjct: 1182 MWMLNCRHQPYREEDGELRIVGPPHQHAHLKRVRIS 1217
>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -1
Query: 309 DLETLPVTCGLGNVITXLFRXQTKRTDFRGQR 214
D + LP+ CGL +I + + +++TD R +
Sbjct: 1380 DGKCLPMLCGLPRIIDIVLQFYSEKTDLRSSK 1411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,044,211
Number of Sequences: 37544
Number of extensions: 241279
Number of successful extensions: 531
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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