Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23m17
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical pr...   202   2e-52
AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine r...    27   6.0  
AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin...    27   6.0  

>Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical
           protein JC8.3a protein.
          Length = 165

 Score =  202 bits (492), Expect = 2e-52
 Identities = 92/125 (73%), Positives = 111/125 (88%)
 Frame = +1

Query: 136 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLXPKKXGDDIAKATSDWKGLKITX 315
           MPPKFDP EIKIV LRCVGGEVGATS+LAPK+GPLGL PKK G+DIAKAT DWKGLK+T 
Sbjct: 1   MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60

Query: 316 QLTVQNRQAQIAVVPSAAALIIRXLKEPPRDRKKQKNIKHNGNISLEXVIXIAKIMRNRS 495
           +LT+QNR A+I VVPSAA+LI++ LKEPPRDRKK KN+KHNG+++++ +I IA+IMR RS
Sbjct: 61  KLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRS 120

Query: 496 MARYL 510
           MA+ L
Sbjct: 121 MAKKL 125


>AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine
           receptor, class x protein12 protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 8/31 (25%), Positives = 14/31 (45%)
 Frame = -1

Query: 162 FIWVKLRGHFVDYLVQLYTIITLNPNGWVWI 70
           F+W    GH + Y  +    +  +P  W W+
Sbjct: 131 FVWSMAIGHVIPYFWRETCYVAYDPVSWTWV 161


>AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin
           protein 73 protein.
          Length = 577

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 309 DLETLPVTCGLGNVITXLFRXQTKRTDFR 223
           D ++LP+ C LG V+   ++     TDFR
Sbjct: 386 DSQSLPIWCKLGKVVKYKYKVTPGWTDFR 414


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,622,843
Number of Sequences: 27780
Number of extensions: 192809
Number of successful extensions: 436
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)