Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23m16
         (592 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    25   0.36 
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    24   1.1  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   1.9  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   5.9  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   5.9  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    21   5.9  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   7.8  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   7.8  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   7.8  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   7.8  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   7.8  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   7.8  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   7.8  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   7.8  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   7.8  

>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 251 SSKQDFNHVHFVSNRKIHTNIFYLVTRNVRLTET 150
           + KQ + H+   SN  I  +    +TR++RLT T
Sbjct: 131 NEKQSYFHIATTSNEFIRVHHSGSITRSIRLTIT 164


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
 Frame = +3

Query: 369 RAAEINRLNYLSKKVDYLHTDLLYYRNIKSKMGAACYEV------WKTIVKKVGGS-PNC 527
           R  E+  L  L++  DY+ + ++ Y N    +G A + V      W   ++ + GS  N 
Sbjct: 165 RNCELVGLADLNQGSDYVRSKIIEYMNHLVDLGVAGFRVDAAKHMWPADLEAIYGSLKNL 224

Query: 528 WRDVGHLLG 554
             D G LLG
Sbjct: 225 NTDHGFLLG 233


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 408 FYLNNLIYLFQLLFVHVKILLIVVY 334
           FY   +I+   LLF  V I+L+ +Y
Sbjct: 215 FYSAFIIFTIHLLFYCVLIILLCIY 239



 Score = 22.2 bits (45), Expect = 3.4
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
 Frame = -2

Query: 450 YFYSTINQYGGNQLFYLNNLI--------YLFQLLFVHVKILLIV---VYLHLQF 319
           YFYS    +  + LFY   +I        Y F L  VH+ +L+ +    Y+HL F
Sbjct: 214 YFYSAFIIFTIHLLFYCVLIILLCIYYFYYAFILFTVHLLLLVCIYYFYYMHLLF 268


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = -2

Query: 546 NGQHLSNNLENPPLSSLWFSRLHSRQ 469
           N    S+   NPP    W  R+H  Q
Sbjct: 186 NNNSKSSQSSNPPQIYPWMKRVHLGQ 211


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 104 TLRICKLIDKIKNS*KFRLIVHFELQDKKC 193
           T  IC L+ K K    F+ ++HF   D KC
Sbjct: 91  TTWICTLLKKDKLLELFKRLIHF---DTKC 117


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 104 TLRICKLIDKIKNS*KFRLIVHFELQDKKC 193
           T  IC L+ K K    F+ ++HF   D KC
Sbjct: 109 TTWICTLLKKDKLLELFKRLIHF---DTKC 135


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 369 RAAEINRLNYLSKKVDYLHTDLLYYRNIKSKMGAACYEV 485
           R  E+  L  L++  DY+ + ++ Y N    +G A + V
Sbjct: 164 RNCELVGLADLNQGSDYVRSKIIEYMNHLVDLGVAGFRV 202


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 369 RAAEINRLNYLSKKVDYLHTDLLYYRNIKSKMGAACYEV 485
           R  E+  L  L++  DY+ + ++ Y N    +G A + V
Sbjct: 165 RNCELVGLADLNQGSDYVRSKIIEYMNHLVDLGVAGFRV 203


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = -2

Query: 546 NGQHLSNNLENPPLSSLWFSRLHSRQ 469
           N    S    NPP    W  R+H  Q
Sbjct: 186 NNNSKSGQSSNPPQIYPWMKRVHLGQ 211


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = -2

Query: 546 NGQHLSNNLENPPLSSLWFSRLHSRQ 469
           N    S    NPP    W  R+H  Q
Sbjct: 186 NNNSKSGQSSNPPQIYPWMKRVHLGQ 211


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = -2

Query: 546 NGQHLSNNLENPPLSSLWFSRLHSRQ 469
           N    S    NPP    W  R+H  Q
Sbjct: 186 NNNSKSGQSSNPPQIYPWMKRVHLGQ 211


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = -2

Query: 546 NGQHLSNNLENPPLSSLWFSRLHSRQ 469
           N    S    NPP    W  R+H  Q
Sbjct: 186 NNNSKSGQSSNPPQIYPWMKRVHLGQ 211


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = -2

Query: 546 NGQHLSNNLENPPLSSLWFSRLHSRQ 469
           N    S    NPP    W  R+H  Q
Sbjct: 142 NNNSKSGQSSNPPQIYPWMKRVHLGQ 167


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = -2

Query: 546 NGQHLSNNLENPPLSSLWFSRLHSRQ 469
           N    S    NPP    W  R+H  Q
Sbjct: 186 NNNSKSGQSSNPPQIYPWMKRVHLGQ 211


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = -2

Query: 546 NGQHLSNNLENPPLSSLWFSRLHSRQ 469
           N    S    NPP    W  R+H  Q
Sbjct: 186 NNNSKSGQSSNPPQIYPWMKRVHLGQ 211


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,353
Number of Sequences: 336
Number of extensions: 3025
Number of successful extensions: 17
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14830622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)