Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23m16
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   3.6  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   6.2  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   6.2  
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    25   8.3  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    25   8.3  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.3  

>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 420 LHTDLLYYRNIKSKMGAACYEVWKTIVKKVGGSPNC 527
           LH D LYY    S + AA + V   I + +GGS +C
Sbjct: 22  LHMDTLYYYYFVSHLAAALF-VDLPITEWLGGSLSC 56


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/41 (21%), Positives = 23/41 (56%)
 Frame = -2

Query: 219 CIKQENTY*HFLSCNSKCTINRNFYEFFILSINLQILNVTK 97
           C+K   +Y  F+    KC++  +F+ +  L+ + ++ N+ +
Sbjct: 12  CLKVRTSYKCFVKYFPKCSVQSSFHSYDELAFSRRLYNLPR 52


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 414 DYLHTDLLYYRNIKSKMGAACYEVWKTI 497
           DY+H  LL YR +  K G   +E ++ +
Sbjct: 227 DYIHGSLLVYRQLFLKAGMFMHERYREV 254


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 433 YCTIEILNLKWVLPAMKSGKP**RKWGV 516
           YC + + +LKW L     GK   R W +
Sbjct: 225 YCMLTLTDLKWQLECFLFGKAFERYWKI 252


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +3

Query: 264 FSLVKTNVKMEYLCEHLDETASVDTLQLEEFLREQRAAEINRLNYLSKKVDYLHTDLLY 440
           F L+  N  MEY    LD  A  D  +  +FL   +   ++    + K+ +YL  +L+Y
Sbjct: 605 FELMYPNSLMEYGDLKLDVFAEFDRKRFFDFLVNTQCYSLDHAAQICKQYNYL-DELVY 662


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 354 FLREQRAAEINRLNYLSKKVDYLHTDLLYYRNI 452
           FLREQ+    N L  +S +   + T ++ Y N+
Sbjct: 106 FLREQKFQATNELENMSPERKVIFTSMINYGNL 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,277,120
Number of Sequences: 5004
Number of extensions: 45398
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)