Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23m16
(592 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0762 + 6915299-6915532,6916043-6916220,6916490-6916656,691... 31 0.91
01_06_1257 - 35778078-35778299,35778952-35779069,35779294-357794... 29 2.8
05_05_0145 - 22690212-22690472,22690701-22690818,22691125-226912... 28 6.4
05_01_0333 - 2614123-2614202,2614466-2614553,2614644-2614721,261... 28 6.4
10_08_0685 - 19875801-19875980,19876074-19876277,19876392-198767... 27 8.5
07_03_0333 - 16888606-16888740,16889463-16889570,16889691-168897... 27 8.5
07_01_0593 + 4417753-4417759,4418240-4419698,4419819-4421301,442... 27 8.5
06_02_0024 - 10714741-10716241,10716774-10717840 27 8.5
04_03_0065 + 10607675-10607877,10608337-10608684,10608746-106088... 27 8.5
>12_01_0762 +
6915299-6915532,6916043-6916220,6916490-6916656,
6916770-6916852,6916940-6917318
Length = 346
Score = 30.7 bits (66), Expect = 0.91
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -3
Query: 194 NIFYLVTRNVRLTETFMNFLFYQSIYKF 111
N+FY+VT+ +R+ E F+ F FY Y+F
Sbjct: 271 NLFYIVTKRLRM-EGFLVFDFYDRYYQF 297
>01_06_1257 -
35778078-35778299,35778952-35779069,35779294-35779433,
35779763-35779864,35779971-35780051,35780333-35780402,
35781053-35781114,35781789-35782183,35782303-35782386,
35782949-35783041,35783144-35783195,35783310-35783376,
35783492-35783550,35784209-35784256,35784927-35785040,
35785162-35785335,35785417-35785944,35786025-35786094,
35786668-35786711
Length = 840
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 297 YLCEHLDETASVDTLQLEEFLREQRAAEINRLNYLSKKVDYL 422
Y E + E VD L LEE +RE+ +N L+YL +V ++
Sbjct: 359 YFSEEMIE-CQVDQLVLEELVREKFPKLVNHLDYLGVQVAWV 399
>05_05_0145 -
22690212-22690472,22690701-22690818,22691125-22691261,
22691743-22691844,22691921-22692001,22692325-22692394,
22692628-22692689,22692908-22693320,22693424-22693507,
22694180-22694272,22694376-22694427,22694542-22694608,
22694714-22694772,22694920-22695033,22695174-22695347,
22695444-22695935,22696021-22696090,22696649-22696692
Length = 830
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 297 YLCEHLDETASVDTLQLEEFLREQRAAEINRLNYLSKKVDYL 422
Y E + E+ VD L LEE +RE+ N L+YL +V ++
Sbjct: 331 YFSEEMIES-QVDQLVLEELVREKFPKLANHLDYLGLQVAWV 371
>05_01_0333 -
2614123-2614202,2614466-2614553,2614644-2614721,
2614795-2614887,2614982-2615101,2615685-2615726,
2615822-2616091,2617188-2617339,2617771-2618233
Length = 461
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +3
Query: 267 SLVKTNVKMEYLCEHLDETASVDTLQLEEFLREQRAAEINRLNYLSKKVDYLHTDLLYYR 446
++ K V++ + +HL+ DT+QLEE L ++ N L+ +D + L + R
Sbjct: 355 TIEKLGVRVGDIIQHLNGEWVSDTIQLEEMLLRLSEDHFDKGNGLNSTLD-IKVGLFHIR 413
Query: 447 N 449
N
Sbjct: 414 N 414
>10_08_0685 -
19875801-19875980,19876074-19876277,19876392-19876724,
19876834-19877115,19877210-19877425,19879752-19880024
Length = 495
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 258 YLFSLVKTNVKMEYLC-EHLDETASVDTLQLEEFLREQRAAEINRLNYL 401
+L+ + K E +C E + T++ DT ++EFL+ +N ++YL
Sbjct: 304 FLYMVCKHPEVQEKICHEAMVATSAGDTASVDEFLQSLTDQALNNMHYL 352
>07_03_0333 -
16888606-16888740,16889463-16889570,16889691-16889790,
16890473-16890560,16890637-16893253
Length = 1015
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +3
Query: 429 DLLYYRNIKSKMGAACYEVWKTIVKKVGGSPNCWRDVGHL 548
+ L+Y N+ + G A ++ T + K NCW++ L
Sbjct: 596 EALHYNNLMEESGIAPNQIVLTSLIKAYSKANCWKEAQDL 635
>07_01_0593 +
4417753-4417759,4418240-4419698,4419819-4421301,
4421378-4421419,4421420-4421584,4421669-4421864,
4421955-4422066,4422154-4422301,4422417-4422614,
4422710-4422866,4422882-4422988,4423084-4423245,
4423314-4423562,4423676-4423810
Length = 1539
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 438 YYRNIKSKMGAACYEVWKTIVKKVGGSPN 524
YY + K C EV++ + + VGG+PN
Sbjct: 192 YYDHFYEK-AQVCVEVYRKLARSVGGNPN 219
>06_02_0024 - 10714741-10716241,10716774-10717840
Length = 855
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = -2
Query: 444 YSTINQYGGNQLFYLNNLIYLFQLLFVHVKILLIVVYLH 328
+ + Y ++ IY+F LLF+ + +LL+ +H
Sbjct: 611 FGLMGAYAAGSSQHMRTSIYIFVLLFIFLVLLLVAFVVH 649
>04_03_0065 +
10607675-10607877,10608337-10608684,10608746-10608833,
10608999-10609166
Length = 268
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 504 KVGGSPNCWRDVGHLLGVTQDDL 572
+ GG+ C R VGH LG+ D L
Sbjct: 178 RAGGAYRCMRQVGHQLGMHPDGL 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,036,864
Number of Sequences: 37544
Number of extensions: 235104
Number of successful extensions: 539
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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