Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23m16
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006791-5|AAF60739.1|  330|Caenorhabditis elegans Hypothetical ...    31   0.81 
U42842-3|AAA83593.1|  449|Caenorhabditis elegans Intestinal acid...    29   1.9  
AF016681-6|AAB66175.2|  317|Caenorhabditis elegans Hypothetical ...    29   1.9  
U56965-3|AAB52664.2|  467|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    28   5.7  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    28   5.7  
Z73422-6|CAH04641.1|  316|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U55373-6|AAC25889.1|  250|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U23511-13|AAC46800.1|  770|Caenorhabditis elegans Hypothetical p...    27   10.0 

>AC006791-5|AAF60739.1|  330|Caenorhabditis elegans Hypothetical
           protein Y4C6A.3 protein.
          Length = 330

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 379 SAALCSRKNSSNCSVSTLAVSSRCSH 302
           + A+CS K S NCS  T  +  +C H
Sbjct: 254 TCAICSTKYSKNCSTQTPRILDKCGH 279


>U42842-3|AAA83593.1|  449|Caenorhabditis elegans Intestinal acid
           phosphatase protein1 protein.
          Length = 449

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
 Frame = +3

Query: 42  NNIKNYIY---DTQYYVYFSASL 101
           NN+KNYIY   DT  Y +FSA L
Sbjct: 310 NNLKNYIYSAHDTTIYAFFSALL 332


>AF016681-6|AAB66175.2|  317|Caenorhabditis elegans Hypothetical
           protein F22E5.11 protein.
          Length = 317

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -2

Query: 393 LIYLFQLLFVHVKILLIVVYLHLQFHQDVHINIPF 289
           +I L +L+F+ + I+L+V  LH+ F    H+ + F
Sbjct: 54  MILLLKLIFLILFIVLVVFTLHILFTNSYHLKLEF 88


>U56965-3|AAB52664.2|  467|Caenorhabditis elegans Hypothetical
           protein C15H9.4 protein.
          Length = 467

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
 Frame = +3

Query: 255 DYLFSLVKTNVKME--YLCEHLDETASVDTLQLEEFLREQ---RAAEINRL---NYLSKK 410
           D  +  ++ ++K E  +  E L+E     T +LEE L E    + AEI  L   N ++ +
Sbjct: 288 DRKYDRLEDDIKKEIKFYAEALEEER-FKTTKLEEILNEAVELQQAEIATLKEQNLMATR 346

Query: 411 VDYLHTDLLYYRNIKSKM 464
           VDY H D   +RN++  M
Sbjct: 347 VDYQHND--RFRNVEENM 362


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 282   NVKMEYLCEHLDETASVDTLQLEEFLREQRAAEINRLNYLSKKVDYLHTD 431
             N K++   E   + AS D L+LEE  + ++AAE+       +K + L  D
Sbjct: 13259 NDKLKLESEIATKKASADKLKLEEQAQAKKAAEVEAAKKQKEKDEQLKLD 13308


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 282   NVKMEYLCEHLDETASVDTLQLEEFLREQRAAEINRLNYLSKKVDYLHTD 431
             N K++   E   + AS D L+LEE  + ++AAE+       +K + L  D
Sbjct: 13259 NDKLKLESEIATKKASADKLKLEEQAQAKKAAEVEAAKKQKEKDEQLKLD 13308


>Z73422-6|CAH04641.1|  316|Caenorhabditis elegans Hypothetical
           protein B0564.11 protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 215 SNRKIHTNIFYLVTRNVRLTETFMNFLFY 129
           + RKIH +I+ +  +NV L E F   L+Y
Sbjct: 30  ARRKIHFSIYVIFKKNVELAEPF-KLLYY 57


>U55373-6|AAC25889.1|  250|Caenorhabditis elegans Hypothetical
           protein F26F12.2 protein.
          Length = 250

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
 Frame = +3

Query: 276 KTNVKMEYLCEHLDETASVDTLQLEEFLREQRAAEINRLNYLSKK--VDYLHTDLLYYRN 449
           K  VKM  L    D     D  +++    +     I+++ + + K   DYL T  LYY  
Sbjct: 140 KITVKMVILTAAKDYGVFYDHCKVQSKFSKSIINPISKMLFNNGKDEADYLKTGELYYAE 199

Query: 450 IKSKMGAACYEVWKTIVK--KVGGSPNCWRDVGHLL 551
           +        Y++ K   K  K+   P  + D+  +L
Sbjct: 200 LHPDFERKMYKIEKPEYKKLKLNNIPKIYNDIALVL 235


>U23511-13|AAC46800.1|  770|Caenorhabditis elegans Hypothetical
           protein C32D5.11 protein.
          Length = 770

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 285 VKMEYLCEHLDETASVDTLQLEEFLRE 365
           V +++L +HLD   +++ L +EEF  E
Sbjct: 341 VHIQFLDDHLDAIIAIEKLTIEEFYNE 367


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,440,087
Number of Sequences: 27780
Number of extensions: 249500
Number of successful extensions: 693
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)