Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23m14
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   2.2  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   6.7  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    25   6.7  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    25   6.7  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    25   6.7  
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    25   8.8  

>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 435 FDINEFFKNKWPSDININEKMQRDSEPLQT 524
           FDI + FK  W    N N  +++  E LQ+
Sbjct: 537 FDIRQSFKENWVVKSNFNNNLRKLHEKLQS 566


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 414 WNPHPENFDINEFFKNKWPSDININEKMQRDSEPLQTNIR 533
           W+  PENF I+E       S+  IN+++    E L+  +R
Sbjct: 238 WDKAPENFTISEHVIENGISEDLINKEVNVVEEKLRPPVR 277


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 334 HKVIMKIIQVICWKWL 381
           H  + K++ V CW+WL
Sbjct: 148 HSPLSKMMWVFCWRWL 163


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +3

Query: 438 DINEFFKNKWPS---DININEKMQRDSEPLQTNIRHAELLYFSD 560
           D+N F+ ++WP+    I +++ +  D+ PL+     + +L  SD
Sbjct: 186 DVNPFYLSEWPTVTDSILLSKSLSSDAIPLKNGEIKSTMLMPSD 229


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 334 HKVIMKIIQVICWKWL 381
           H  + K++ V CW+WL
Sbjct: 148 HSPLSKMMWVFCWRWL 163


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 141 YSIDFLKMSHELLYLCNFDDNPDTIIDD 224
           YS +   ++ +L+Y  +FDDN D   DD
Sbjct: 463 YSEEVSVLNDKLIYDPDFDDNLDKTFDD 490


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,174,824
Number of Sequences: 5004
Number of extensions: 40231
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)