Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23m14
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0316 + 2802057-2802474,2802575-2802712,2802803-2802891,280...    28   6.9  
08_01_0306 - 2570411-2570419,2570809-2570886,2571464-2571671,257...    28   6.9  
08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    28   6.9  
04_03_0569 + 17235288-17235473,17235766-17235954                       27   9.1  

>08_01_0316 +
           2802057-2802474,2802575-2802712,2802803-2802891,
           2803711-2803980,2804063-2804193,2804364-2804481,
           2804561-2804650,2804731-2804799,2804846-2804854,
           2804903-2804980,2805249-2805303,2805810-2806003
          Length = 552

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 504 DSEPLQTNIRHAELLYFSDQIFSTLSGIEPTYLNLWWNF 620
           DS   +  IR  +++ F D   STL  +E   L+L W +
Sbjct: 392 DSTAERIGIRRGDVIVFKDNRCSTLPQLEDYLLSLGWGY 430


>08_01_0306 -
           2570411-2570419,2570809-2570886,2571464-2571671,
           2573400-2573521,2573815-2573883,2573963-2574052,
           2574113-2574230,2574956-2575086,2575195-2575464,
           2577323-2577433,2577604-2578152
          Length = 584

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 504 DSEPLQTNIRHAELLYFSDQIFSTLSGIEPTYLNLWWNF 620
           DS   +  IR  +++ F D   STL  +E   L+L W +
Sbjct: 397 DSIAERLGIRRGDVIVFQDSCCSTLPQLEDYLLSLGWGY 435


>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 504 DSEPLQTNIRHAELLYFSDQIFSTLSGIEPTYLNLWWNF 620
           DS   +  IR  +++ F D   STLS +E   L+L W +
Sbjct: 373 DSTAEKLGIRRGDVIDFQDIDCSTLSQLEDHLLSLGWGY 411


>04_03_0569 + 17235288-17235473,17235766-17235954
          Length = 124

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +3

Query: 357 SSNMLEMAIISL---LRYCDYNWNPHPENFDINEFFKNKWPSDININEKMQRDSE 512
           SSNM+   ++ L   L     +W+PHP+   +    + +W   ++++  M RD +
Sbjct: 21  SSNMVAADLVPLRLDLVPLSQSWHPHPDLAGVEYLARRQWEEGVDVS--MLRDGQ 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,962,278
Number of Sequences: 37544
Number of extensions: 191655
Number of successful extensions: 419
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)