Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23m07
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    26   4.2  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    26   4.2  
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c...    25   5.5  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   5.5  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    25   7.3  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    25   9.6  

>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 276 KEMLYRGRIRVQIKNDDGAPVNPEFPTRESVMKYIGESIPKLKTRQNRPVEQ 431
           +E  Y GR   + + D  +P +PE    E   ++     P  K  + RPV+Q
Sbjct: 100 RERDYEGRRDRKERRDGVSPFSPEGEGLERKREHEKLQAPSPKEEEERPVDQ 151


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 470 FCLTDCLICWLRLLFHRSILSC 405
           +CLT     WL +L+ R  L+C
Sbjct: 40  YCLTTLFFTWLIILYPRPTLAC 61


>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 315

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 312 IKNDDGAPVNPEFPTRESVMKY 377
           ++ND  + VN EFP RE ++ +
Sbjct: 120 LRNDKASTVNIEFPYREGIVTH 141


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = -2

Query: 440 LRLLFHRSILSCL*LWNGFTNIFHYRFSSRKFRIYRGTIIILNLNAYSASVQHFLSTSLC 261
           +++ F   I+S L ++NGF N   Y F    + +Y     I  ++  +AS  +  +   C
Sbjct: 301 IKIFFSEPIVSSLGIYNGFVNGLLYFFLQAIWPVY---FSIYKMSDMAASCTYMAAMPAC 357


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = -2

Query: 368 YRFSSRKFRIYRGTIIILNLNAYSASVQHFLSTSLCFFSGFQDVIILAMSSHFVWNFL 195
           Y+++ + + I  G   + N+N Y A++     TS  F     D +   +S++ V N L
Sbjct: 469 YKYAKKLYSILNGGSTLRNVNDYLAALNPGYVTSDDFGEDGDDTVHTYVSTYAVPNVL 526


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 317 LNLNAYSASVQHFLSTSLCFFSGFQDVIILAMSSHFVWNFLNQSSLL 177
           LNL A+   +  ++S  + F S + D+++L   +   W   + SS+L
Sbjct: 320 LNLLAWILKLYSYMSLFILFGSNYSDIVLL-FGAGSKWASPDSSSIL 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,047,514
Number of Sequences: 5004
Number of extensions: 39110
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)