Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23m07
(546 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X12791-1|CAA31280.1| 144|Homo sapiens protein ( Human mRNA for ... 58 2e-08
BC010947-1|AAH10947.1| 144|Homo sapiens signal recognition part... 58 2e-08
BC017830-1|AAH17830.1| 110|Homo sapiens SRP19 protein protein. 33 0.65
AB065904-1|BAC06119.1| 316|Homo sapiens seven transmembrane hel... 31 3.5
AB065653-1|BAC05879.1| 316|Homo sapiens seven transmembrane hel... 31 3.5
>X12791-1|CAA31280.1| 144|Homo sapiens protein ( Human mRNA for
19kD protein of signal recognition particle (SRP). ).
Length = 144
Score = 58.4 bits (135), Expect = 2e-08
Identities = 25/48 (52%), Positives = 36/48 (75%)
Frame = +3
Query: 276 KEMLYRGRIRVQIKNDDGAPVNPEFPTRESVMKYIGESIPKLKTRQNR 419
+++ YRGR+RVQ+K +DG+ +FP+R+SVM Y E IPKLKTR +
Sbjct: 74 RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQK 121
>BC010947-1|AAH10947.1| 144|Homo sapiens signal recognition
particle 19kDa protein.
Length = 144
Score = 58.4 bits (135), Expect = 2e-08
Identities = 25/48 (52%), Positives = 36/48 (75%)
Frame = +3
Query: 276 KEMLYRGRIRVQIKNDDGAPVNPEFPTRESVMKYIGESIPKLKTRQNR 419
+++ YRGR+RVQ+K +DG+ +FP+R+SVM Y E IPKLKTR +
Sbjct: 74 RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQK 121
>BC017830-1|AAH17830.1| 110|Homo sapiens SRP19 protein protein.
Length = 110
Score = 33.1 bits (72), Expect = 0.65
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = +3
Query: 276 KEMLYRGRIRVQIKNDDGAPVNPEFPT 356
+++ YRGR+RVQ+K +DG+ +FP+
Sbjct: 74 RDVQYRGRVRVQLKQEDGSLCLVQFPS 100
>AB065904-1|BAC06119.1| 316|Homo sapiens seven transmembrane helix
receptor protein.
Length = 316
Score = 30.7 bits (66), Expect = 3.5
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Frame = -3
Query: 421 GRFCLVFSF----GMDSPIYFITDSLVGNSGFTGAPSSFLI*TRILPLYNISFPHHCASF 254
G F ++F+ G+ +P+YF +GN F A SF++ R+L + F F
Sbjct: 41 GNFLIIFTIRSDPGLTAPLYF----FLGNLAFLDASYSFIVAPRML----VDF------F 86
Query: 253 RDSKMLSY*PCLVTLF 206
+ K++SY C+ LF
Sbjct: 87 SEKKVISYRGCITQLF 102
>AB065653-1|BAC05879.1| 316|Homo sapiens seven transmembrane helix
receptor protein.
Length = 316
Score = 30.7 bits (66), Expect = 3.5
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Frame = -3
Query: 421 GRFCLVFSF----GMDSPIYFITDSLVGNSGFTGAPSSFLI*TRILPLYNISFPHHCASF 254
G F ++F+ G+ +P+YF +GN F A SF++ R+L + F F
Sbjct: 41 GNFLIIFTIRSDPGLTAPLYF----FLGNLAFLDASYSFIVAPRML----VDF------F 86
Query: 253 RDSKMLSY*PCLVTLF 206
+ K++SY C+ LF
Sbjct: 87 SEKKVISYRGCITQLF 102
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,016,754
Number of Sequences: 237096
Number of extensions: 1265015
Number of successful extensions: 2112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2112
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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