Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23m07
(546 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067212-1|AAC16997.3| 160|Caenorhabditis elegans Hypothetical ... 50 1e-06
Z81513-6|CAB04176.1| 341|Caenorhabditis elegans Hypothetical pr... 30 0.95
U53139-4|AAK18931.2| 369|Caenorhabditis elegans Serpentine rece... 27 6.7
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 27 8.8
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 27 8.8
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 27 8.8
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 27 8.8
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 27 8.8
U39999-12|AAA81110.1| 577|Caenorhabditis elegans Hypothetical p... 27 8.8
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 27 8.8
>AF067212-1|AAC16997.3| 160|Caenorhabditis elegans Hypothetical
protein F37F2.2 protein.
Length = 160
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/41 (56%), Positives = 30/41 (73%)
Frame = +3
Query: 291 RGRIRVQIKNDDGAPVNPEFPTRESVMKYIGESIPKLKTRQ 413
+GR+RVQ+KNDDG + E TR+ + K + E IPKLKTRQ
Sbjct: 79 QGRVRVQLKNDDGTAKH-EQKTRDEIFKMVAEMIPKLKTRQ 118
>Z81513-6|CAB04176.1| 341|Caenorhabditis elegans Hypothetical
protein F26D2.7 protein.
Length = 341
Score = 30.3 bits (65), Expect = 0.95
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = -2
Query: 362 FSSRKFRI-YRGTIIILNLNAYSASVQHFLSTSLCFFSGFQDVIILAMSSHFVWNFL 195
F +R F + Y +I+ ++N + S ++FLS +L F+ F +II + FV+ +L
Sbjct: 59 FIARPFTLNYNRAVILFSINDWILS-KNFLSIALSFWITFYLLIISLVGVQFVYRYL 114
>U53139-4|AAK18931.2| 369|Caenorhabditis elegans Serpentine
receptor, class w protein67 protein.
Length = 369
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -1
Query: 303 VFCLCTTFPFHITVLLFGIPRCYHTSHV*SLCLEFSKSKLS-VIRTYSAYVLLM 145
+FCLC + L+F RC++ ++ +E S L+ V+R SA++ +M
Sbjct: 79 MFCLCLFIHAYTLTLIFPDDRCWNYHSYINVFIEVWVSSLNDVLRRASAWLSVM 132
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = -1
Query: 213 LCLEFSKSKLSVIRTYSAYVLLMSFC*AISLN*HLKITFEFYTI 82
L E KS+ S +R++SA L + FC + ++ + ++FY +
Sbjct: 54 LFYELYKSRNSYLRSFSAISLRIIFCCLLVVDLTATVIYDFYLL 97
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = -1
Query: 213 LCLEFSKSKLSVIRTYSAYVLLMSFC*AISLN*HLKITFEFYTI 82
L E KS+ S +R++SA L + FC + ++ + ++FY +
Sbjct: 54 LFYELYKSRNSYLRSFSAISLRIIFCCLLVVDLTATVIYDFYLL 97
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = -1
Query: 213 LCLEFSKSKLSVIRTYSAYVLLMSFC*AISLN*HLKITFEFYTI 82
L E KS+ S +R++SA L + FC + ++ + ++FY +
Sbjct: 54 LFYELYKSRNSYLRSFSAISLRIIFCCLLVVDLTATVIYDFYLL 97
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = -1
Query: 213 LCLEFSKSKLSVIRTYSAYVLLMSFC*AISLN*HLKITFEFYTI 82
L E KS+ S +R++SA L + FC + ++ + ++FY +
Sbjct: 54 LFYELYKSRNSYLRSFSAISLRIIFCCLLVVDLTATVIYDFYLL 97
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = -1
Query: 213 LCLEFSKSKLSVIRTYSAYVLLMSFC*AISLN*HLKITFEFYTI 82
L E KS+ S +R++SA L + FC + ++ + ++FY +
Sbjct: 54 LFYELYKSRNSYLRSFSAISLRIIFCCLLVVDLTATVIYDFYLL 97
>U39999-12|AAA81110.1| 577|Caenorhabditis elegans Hypothetical
protein F41G3.3 protein.
Length = 577
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 333 PVNPEFPTRESVMKYIGESIPKLKTRQNRPVEQQPQP 443
PV P P + I SIP +++ N P+ Q P P
Sbjct: 127 PVKPMGPPKNLARVQISTSIPSMES-DNSPIPQAPPP 162
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = -1
Query: 213 LCLEFSKSKLSVIRTYSAYVLLMSFC*AISLN*HLKITFEFYTI 82
L E KS+ S +R++SA L + FC + ++ + ++FY +
Sbjct: 54 LFYELYKSRNSYLRSFSAISLRIIFCCLLVVDLTATVIYDFYLL 97
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,318,723
Number of Sequences: 27780
Number of extensions: 218317
Number of successful extensions: 593
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -