Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23m07
         (546 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.66 
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    23   1.5  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   1.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   1.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.2  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = +3

Query: 285 LYRGRIRVQIKNDDGAPVNPEFPTRESVMK---YIGESIPKLKTRQNR--PVEQQPQPTN 449
           ++RGR  V   +++G+P +PE  +R SV +    I  S P  +T   +   +E+ P   +
Sbjct: 307 IHRGRGSVHNGSNNGSPRSPESNSRCSVKREKIKISVSYPSTETLNTKCNTLERTPSKCS 366

Query: 450 Q 452
           Q
Sbjct: 367 Q 367


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 244 WNPEKKHSDVERKCCTEA 297
           W  E+K   VE KC  EA
Sbjct: 141 WTVERKEGKVEGKCLIEA 158


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 244 WNPEKKHSDVERKCCTEA 297
           W  E+K   VE KC  EA
Sbjct: 157 WTVERKEGKVEGKCLIEA 174


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 244 WNPEKKHSDVERKCCTEA 297
           W  E+K   VE KC  EA
Sbjct: 214 WTVERKEGKVEGKCLIEA 231


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 408  RQNRPVEQQPQPTNQ 452
            +  +P +QQPQP  Q
Sbjct: 1520 QSQQPQQQQPQPQQQ 1534


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,314
Number of Sequences: 438
Number of extensions: 2827
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)