Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23m05
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|... 28 1.3
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 27 2.2
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 3.9
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 26 5.1
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 5.1
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 26 5.1
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 25 9.0
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 25 9.0
SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit L11... 25 9.0
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 25 9.0
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 25 9.0
>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 181 RPQWELYDLRKDPAETNNL 237
+ +WELYDL +D E NL
Sbjct: 490 KTEWELYDLSQDKGELENL 508
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 172 YYYRPQWELYDLRKDPAETNNLHGKPSLEEVESNL 276
++Y W Y + K + T L+ KPSLE+V SNL
Sbjct: 632 FFYLNNW--YSV-KPSSFTKGLNNKPSLEDVFSNL 663
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 221 QKPITYMVNHPWRRWSRISENDCRDGSAPPAT 316
Q+ + V P+RR + I+EN DG+A P T
Sbjct: 1626 QESMNMGVYSPYRRSTEIAENMSMDGNAYPYT 1657
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 256 PGMVYHVSYWFLPDPYEGRRAPTA 185
PG + +S FLP PY G RA A
Sbjct: 288 PGDIVDISGIFLPTPYTGFRAMRA 311
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 275 SENDCRDGSAPPATRGCVRPTPSW 346
+EN+ DG A AT G P SW
Sbjct: 611 AENETADGKAQTATDGEAAPKKSW 634
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 5.1
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 157 KTLKQYYYRPQWELYDLRKDPAE---TNNLHGKPSLEEVESNLRERLSRWQRS 306
+T+K + +WEL AE + L+G LEE ++ LRE SR + S
Sbjct: 511 ETIKARIWLARWELGKKNYREAELYLSEVLNGDLELEEAKALLRELRSRMEHS 563
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -3
Query: 163 ASCTKVEAACCAFCLIGRSVSIYCKLVSMFLREWIMMFVSNFIL 32
A C KV A A C+ +V +Y + + W+ V FIL
Sbjct: 180 AKCVKVTAVFLAKCVKVIAVGLYNSKKDLVVTIWLAWVVICFIL 223
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = -3
Query: 283 VLGDSTPPPPGMVYHVSYWFLPDPYEGRRAPTAAGSNIASASCTKVEAA 137
V G + PPPP + + P Y AP ++ +SA+ AA
Sbjct: 42 VRGLTIPPPPSVDHSAPPSGPPPSYSNSAAPATPAASASSAAPAPAPAA 90
>SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit
L11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 214 DPAETNNLHGKPSLEEVESNLRERLS 291
DP E NL PSLE ++S+L LS
Sbjct: 163 DPFEVENLSKIPSLEFLQSSLLSVLS 188
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -3
Query: 163 ASCTKVEAACCAFCLIGRSVSIYCKLVSMFLREWIMMFVSNFIL 32
A C KV A A C+ +V +Y + + W+ V FIL
Sbjct: 170 AQCVKVTAVFLAKCVKVIAVGLYNSKKDLVVTIWLAWVVICFIL 213
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 217 PAETNNLHGKPSLEEVESNLRERLSRWQRST 309
PA TN+ P + + S+L + S+ QRST
Sbjct: 295 PAATNSAISSPFVRKSSSDLEAKPSKKQRST 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,458,547
Number of Sequences: 5004
Number of extensions: 49399
Number of successful extensions: 133
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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