Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23m05
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1000 + 22130210-22130300,22130412-22130683,22130780-221309...    30   1.7  
11_06_0043 + 19557966-19558721                                         29   2.3  
12_02_0331 + 17648876-17649016,17650593-17650898                       28   5.3  
09_04_0011 + 13703564-13703766,13704685-13705526,13705628-137057...    28   5.3  
02_04_0471 + 23192001-23192102,23192229-23192356,23192440-231931...    28   7.0  
01_06_0658 - 30942890-30943054,30943159-30943266,30943448-309435...    28   7.0  
04_01_0527 - 6913266-6913802                                           27   9.2  
01_07_0225 - 42126650-42127020,42127057-42127150,42127229-421275...    27   9.2  

>10_08_1000 +
           22130210-22130300,22130412-22130683,22130780-22130915,
           22131228-22131361,22131550-22131655,22131829-22131914,
           22132304-22132492,22132580-22132738,22133083-22133196,
           22133483-22133734
          Length = 512

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +1

Query: 82  RLIYSKY*RNDLLNRTR---SKQPLPWYKTLKQYYYRPQ 189
           RL+ ++Y  ND L++      KQPLPW   L+  YY  Q
Sbjct: 148 RLLVAEYMPNDTLSKHLFHWDKQPLPWEMRLRVAYYIAQ 186


>11_06_0043 + 19557966-19558721
          Length = 251

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = -3

Query: 196 APTAAGSNIASASCTKVEAAC-CAFCLIGRSVSIYCKLVSMF 74
           A +++ ++ A+ +CT V+AAC  A     R+ + Y +L+S+F
Sbjct: 23  ATSSSSASAANFTCTTVQAACQSAIGYTTRNATTYAELLSLF 64


>12_02_0331 + 17648876-17649016,17650593-17650898
          Length = 148

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 248 HPWRRWSRISENDCRDGSAPPATRGCVRPTPSW 346
           H  RRW   S    R G    + RG +R +P W
Sbjct: 84  HGKRRWQDASNEVSRGGDVITSARGEIRSSPRW 116


>09_04_0011 +
           13703564-13703766,13704685-13705526,13705628-13705704,
           13706294-13706339,13706479-13706722,13710078-13710150,
           13711119-13711235
          Length = 533

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 289 SRWQRSTRDPWLCSPDAVME 348
           +RW  S+RDPWL S    M+
Sbjct: 464 TRWSNSSRDPWLSSNSCNMD 483


>02_04_0471 +
           23192001-23192102,23192229-23192356,23192440-23193108,
           23193900-23194086
          Length = 361

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -1

Query: 366 GVVRVAFH--DGVGRTQPRVAGGALPSRQSFSEIRLH 262
           G++++A H   G GR   RVAGG  P R+ F  +RLH
Sbjct: 249 GLLQLARHFFAGCGR---RVAGGCTPCRRFFLLLRLH 282


>01_06_0658 -
           30942890-30943054,30943159-30943266,30943448-30943598,
           30943683-30943780,30943869-30944020,30944298-30944403,
           30944499-30944588,30944668-30944813,30945396-30945695,
           30945953-30946038,30947260-30947996
          Length = 712

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 265 PPPPGMVYHVSYWFLPDPYEGRRAPTAAGSNIASA--SCTKVEAACCAF 125
           PP PG++  + +  L  P E      A G+  ASA   C+++   C AF
Sbjct: 8   PPAPGLLILLIFLALASPGEVAGDDAAPGNVTASAPLPCSELSRVCTAF 56


>04_01_0527 - 6913266-6913802
          Length = 178

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = +2

Query: 230 ITYMVNHPWRRWSRISENDCRDGSAPPATRGCVRPTPSWNATLTTPCAA 376
           ++  + HP RR  R     CR    PP     + P PS  A    P AA
Sbjct: 91  VSARLGHPVRRRRRAHRRQCRPSPPPP-----LSPEPSTAAVAEPPAAA 134


>01_07_0225 -
           42126650-42127020,42127057-42127150,42127229-42127523,
           42127604-42127809,42127898-42127945,42128078-42128296
          Length = 410

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 121 NRTRSKQPLPWYKTLKQYYYRPQWELYDLRKDPAE 225
           NRT+    L W     +   RP W L D+  DP +
Sbjct: 196 NRTKFDAYLAWLHRNYRLVLRPAWTLADIADDPED 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,348,874
Number of Sequences: 37544
Number of extensions: 360475
Number of successful extensions: 1240
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)