Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23m05
         (627 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071569-1|AAL49191.1|  524|Drosophila melanogaster RE63280p pro...    99   6e-21
AE014297-2595|AAF55607.1|  524|Drosophila melanogaster CG14291-P...    99   6e-21
AY060689-1|AAL28237.1| 1952|Drosophila melanogaster GH12891p pro...    31   1.3  
AE014298-1331|AAF46494.1| 4547|Drosophila melanogaster CG12139-P...    31   1.3  
X85331-1|CAA59680.1|  437|Drosophila melanogaster msh protein.         30   2.2  
AE014296-2965|AAN11683.1|  554|Drosophila melanogaster CG32191-P...    29   5.1  
AE014298-1714|AAF48114.1| 1373|Drosophila melanogaster CG15737-P...    29   6.8  

>AY071569-1|AAL49191.1|  524|Drosophila melanogaster RE63280p
           protein.
          Length = 524

 Score = 98.7 bits (235), Expect = 6e-21
 Identities = 45/97 (46%), Positives = 59/97 (60%), Gaps = 3/97 (3%)
 Frame = +1

Query: 115 LLNRTRSKQPLPWYKTLKQYYYRPQWELYDLRKDPAETNNLHGKPSLEEVESNLRERLSR 294
           +LN T  KQ LPWY++L QYY RP+WELYD++ DP E  NL  K         LRE+L  
Sbjct: 410 ILNATLRKQTLPWYRSLLQYYQRPEWELYDIKTDPLERFNLADKAKYNGTLKQLREQLFD 469

Query: 295 WQRSTRDPWLCSPDAVMERD---SDNAVCRSLDNGLL 396
           WQ +T+DPW C+P AV++      D  VC +L +  L
Sbjct: 470 WQVATKDPWRCAPHAVLQEQGVYKDQPVCLTLGHEAL 506


>AE014297-2595|AAF55607.1|  524|Drosophila melanogaster CG14291-PA
           protein.
          Length = 524

 Score = 98.7 bits (235), Expect = 6e-21
 Identities = 45/97 (46%), Positives = 59/97 (60%), Gaps = 3/97 (3%)
 Frame = +1

Query: 115 LLNRTRSKQPLPWYKTLKQYYYRPQWELYDLRKDPAETNNLHGKPSLEEVESNLRERLSR 294
           +LN T  KQ LPWY++L QYY RP+WELYD++ DP E  NL  K         LRE+L  
Sbjct: 410 ILNATLRKQTLPWYRSLLQYYQRPEWELYDIKTDPLERFNLADKAKYNGTLKQLREQLFD 469

Query: 295 WQRSTRDPWLCSPDAVMERD---SDNAVCRSLDNGLL 396
           WQ +T+DPW C+P AV++      D  VC +L +  L
Sbjct: 470 WQVATKDPWRCAPHAVLQEQGVYKDQPVCLTLGHEAL 506


>AY060689-1|AAL28237.1| 1952|Drosophila melanogaster GH12891p
           protein.
          Length = 1952

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = +2

Query: 251 PWRRWSRISENDCRDGSAPPAT---RGCVRPTPSWNATLTTPCAAV 379
           PW  W    E DC+DGS  PAT   R C   T     T  TP A +
Sbjct: 862 PWF-WKCDGEKDCKDGSDEPATCAPRHCRAGTFQCKNTNCTPSATI 906


>AE014298-1331|AAF46494.1| 4547|Drosophila melanogaster CG12139-PB
            protein.
          Length = 4547

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = +2

Query: 251  PWRRWSRISENDCRDGSAPPAT---RGCVRPTPSWNATLTTPCAAV 379
            PW  W    E DC+DGS  PAT   R C   T     T  TP A +
Sbjct: 3457 PWF-WKCDGEKDCKDGSDEPATCAPRHCRAGTFQCKNTNCTPSATI 3501


>X85331-1|CAA59680.1|  437|Drosophila melanogaster msh protein.
          Length = 437

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 304 SAAIATIVLGDSTPPPPGMVYHVSY-WFLPDPYEGRRAPTAAGSNIASASCTKVEA 140
           SAA + I    STPPPP  V   S    LP        P AAG++ A+A+  + +A
Sbjct: 88  SAATSPISQASSTPPPPPAVGRPSSRQHLPSRRRRAPRPLAAGAHAAAAAHAQHQA 143


>AE014296-2965|AAN11683.1|  554|Drosophila melanogaster CG32191-PA
           protein.
          Length = 554

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 196 LYDLRKDPAETNNLHGKPSLEEVESNLRERLSRWQRSTRDP 318
           LYD+  DP E NNL       +V + LR R+   + S   P
Sbjct: 484 LYDILSDPCEQNNLVYSERHSDVLTALRRRVQELRASASRP 524


>AE014298-1714|AAF48114.1| 1373|Drosophila melanogaster CG15737-PA
           protein.
          Length = 1373

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 265 PPPPGMVYHVSYWFLPDPYEGRRAPTAAGSNIASASC 155
           PPPP M +H +  F  +P +G +AP A     +S+ C
Sbjct: 758 PPPPHMFFHFADGFC-NPGQGHQAPPATMWPHSSSPC 793


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,941,785
Number of Sequences: 53049
Number of extensions: 586395
Number of successful extensions: 2177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2175
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2600432100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)