Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23m05
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022985-3|AAB69970.1|  355|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    28   6.3  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    28   6.3  

>AF022985-3|AAB69970.1|  355|Caenorhabditis elegans Hypothetical
           protein T15B7.11 protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 481 YLQFHMNLTVFKFLNRYFNAMKA-IVYDSLGVR 386
           YL ++ NLT+F  +  +FN   + I+Y SL  +
Sbjct: 293 YLNYYQNLTIFMNVLSFFNTTTSFIIYSSLSAK 325


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 263  WSRISENDCRDGSAPPATRGC 325
            W    ENDC DGS   + RGC
Sbjct: 1330 WLCDGENDCGDGSDESSERGC 1350


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 263  WSRISENDCRDGSAPPATRGC 325
            W    ENDC DGS   + RGC
Sbjct: 1330 WLCDGENDCGDGSDESSERGC 1350


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,704,310
Number of Sequences: 27780
Number of extensions: 288728
Number of successful extensions: 878
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)