Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23m01
(515 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1176 + 10112257-10113126 32 0.31
07_01_0622 - 4625246-4627759 29 1.7
02_05_0207 + 26778403-26778927 28 3.9
01_06_1229 + 35551522-35552169 28 3.9
08_02_0899 + 22401302-22401694 28 5.1
01_04_0074 + 15760667-15761815 28 5.1
12_01_0373 + 2897874-2898911 27 6.8
06_03_0395 - 20354713-20355570 27 6.8
06_02_0011 - 10569471-10572245 27 6.8
02_04_0216 + 20986231-20988021 27 6.8
01_06_1217 + 35485182-35485949 27 6.8
02_02_0156 - 7277793-7277875,7278535-7278638,7278808-7279211,727... 27 8.9
>06_01_1176 + 10112257-10113126
Length = 289
Score = 31.9 bits (69), Expect = 0.31
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Frame = -3
Query: 462 SFALHYLCAPWTTARS-----AEPSSAASDTAVPTAVVRAG 355
SFA H + P+ ARS A ++AA+D A PTAV+ AG
Sbjct: 219 SFAAHSISPPFAAARSSDGPAAAAAAAAADWAPPTAVLDAG 259
>07_01_0622 - 4625246-4627759
Length = 837
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 167 NWTCLYVIAVWVVRGLCLAH 226
NW+ Y IA+ V RGLC H
Sbjct: 632 NWSTRYQIAIGVARGLCYLH 651
>02_05_0207 + 26778403-26778927
Length = 174
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = -3
Query: 459 FALHYLCAPWTTARSAEPSSAASDTAVPTAVV--RAGYSSTVAV 334
F+LH + A + S P++A D+++P+AVV R G S++ +
Sbjct: 9 FSLHVVLAGLPPSMSLAPAAARHDSSLPSAVVVARVGPLSSIVL 52
>01_06_1229 + 35551522-35552169
Length = 215
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 271 PCCVHARGAYCSASCWQCGDMHGYRGGVAGSY 366
PCCV + SC+ ++HG G GSY
Sbjct: 186 PCCVFVQET--DPSCYSVCNVHGEESGAQGSY 215
>08_02_0899 + 22401302-22401694
Length = 130
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +1
Query: 163 PQLDMPVRNCCLGCQGPMSGPCGPLAYRMDCCGQVGPCCVHARGAYC 303
P D+ V L G +G P +Y CC GPC V G C
Sbjct: 14 PVGDLQVAKLALLVAG--NGFISPSSYLRRCCDDDGPCFVDGAGERC 58
>01_04_0074 + 15760667-15761815
Length = 382
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 146 QLEVNRRNWTCLYVIAVWVVRGL-CLAHAVPWPIEWIAAVKLVPVACTREVLIVQHRVGS 322
+LE + W+ + +++ G L H P+ ++W A ++ RE++ + RV S
Sbjct: 281 RLESRHQQWSMTHSLSMIDAFGRGTLVHGDPFSVDWSADYGMLSFDLEREIVFLHDRVSS 340
>12_01_0373 + 2897874-2898911
Length = 345
Score = 27.5 bits (58), Expect = 6.8
Identities = 21/57 (36%), Positives = 27/57 (47%)
Frame = -3
Query: 423 ARSAEPSSAASDTAVPTAVVRAGYSSTVAVHISALPTRC*TISTSRVHATGTNLTAA 253
A +A PSS++SDT T T A + T C T STS T++TAA
Sbjct: 257 ALAAVPSSSSSDTTTTT---------TAAATTTTSDTSCSTASTSTTSNGATSVTAA 304
>06_03_0395 - 20354713-20355570
Length = 285
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +1
Query: 160 SPQLDMPVRNCCLGCQGP---MSGPCGPLAYRMDCC 258
+P L+ P CC C+GP ++ G + + CC
Sbjct: 132 APPLEAPANGCCRRCRGPSTAVATATGAPSTSLPCC 167
>06_02_0011 - 10569471-10572245
Length = 924
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 471 IHISFALHYLCAPWTTARSAEPSSAASDT 385
+H+ A+H LC + A S P + DT
Sbjct: 556 VHVLIAIHVLCGMASPASSVSPQNRTEDT 584
>02_04_0216 + 20986231-20988021
Length = 596
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 444 LCAPWTTARSAEPSSAASDTAVPTAVVRA 358
L PW A +A P+SAA+ +AV V A
Sbjct: 5 LTPPWPAAAAAAPASAAAASAVTVEAVLA 33
>01_06_1217 + 35485182-35485949
Length = 255
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 435 PWTTARSAEPSSAASDTAVPTAVVRAGYS 349
PW R + PSSAA+ + TA+ A S
Sbjct: 4 PWVKTRPSSPSSAAASPSPSTALAAAAAS 32
>02_02_0156 -
7277793-7277875,7278535-7278638,7278808-7279211,
7279403-7279543,7279700-7279904,7279984-7280093
Length = 348
Score = 27.1 bits (57), Expect = 8.9
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -2
Query: 442 MRTMDHSKKRRALQCSLRYSRAHSCSTSRLLLHGSRAYLRTANTMLNNKHLSRARNRDQL 263
M+T ++ A + R SR+HS T +H L+T NT+ HL +++
Sbjct: 14 MQTGHDNRAMSATALNERSSRSHSVVT----IHVRGQDLKTGNTLRGALHLVDLAGSERV 69
Query: 262 DRS 254
DRS
Sbjct: 70 DRS 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,618,955
Number of Sequences: 37544
Number of extensions: 249115
Number of successful extensions: 808
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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