Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23l24
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.0  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.3  

>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
 Frame = +1

Query: 238 PLLSYFNDVCNPHSELKWY*EGDTAKSSAVRPLPYRNTSAK*PLTRVQNRKHLKARLHLT 417
           PLL  FND   P +           K S +     R+ ++   LT +  +   +  LH  
Sbjct: 168 PLLKSFNDSAIPENAANLSSSSKNMKDSTLSSQKARSNTSSSFLTPLHEQLESRCALHTA 227

Query: 418 RRTPANLK--LRL*QRKTP*A*SVLLGAVKRGT 510
            + P   K  LR  +  +P +   +L A+   T
Sbjct: 228 AKDPFRSKNSLRCNRGHSPLSSQQILPAISNNT 260


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -2

Query: 387  PILNSRQRLFR*SISVWEWPYGRTLCCISFLVPF*LAVWITDII 256
            P L+     F+  I++W W   +     SFL+   +  W  +I+
Sbjct: 1052 PFLDFSPSSFKLGITLWNWMMNQVPSFSSFLISNIIRNWKNEIV 1095


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,974,908
Number of Sequences: 5004
Number of extensions: 36465
Number of successful extensions: 63
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)