Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23l22
(476 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 33 0.030
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 31 0.091
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 31 0.12
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 27 1.5
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch... 26 2.6
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 3.4
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C... 25 4.5
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 25 4.5
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 25 5.9
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 25 5.9
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 25 5.9
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 25 7.9
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 32.7 bits (71), Expect = 0.030
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = +2
Query: 191 NKIDKELIDSQNARLFIIQKYDELCNKINFLTELDSTFNGFRRDVKSIEQQVCELSQRVD 370
+K+ EL SQ +R K DE +K+N L+EL+S + ++ I + + D
Sbjct: 301 SKVALELQSSQLSRQIEFSKKDE-SSKLNILSELESKISEKENELSEILPKYNAIVSEAD 359
Query: 371 SIEKRII 391
+ KRI+
Sbjct: 360 DLNKRIM 366
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 31.1 bits (67), Expect = 0.091
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +2
Query: 152 IESKFDEIKIGIVNKIDKELIDSQNARLFIIQKYDELCNKINFLTELDSTFNGFRRDVKS 331
+++ + +K ++I+K + N I+QK DEL I +EL+ N +S
Sbjct: 117 LQTDRENLKHQFEDQIEKLNSEISNQNSLILQKKDELEKSIQRCSELEEKINSL-ESAQS 175
Query: 332 IEQQV 346
IEQ+V
Sbjct: 176 IEQEV 180
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 30.7 bits (66), Expect = 0.12
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 272 INFLTELDSTFNGFRRDVKSIEQQVCELSQRVDSIEKRIICKECPSL 412
++ LT DS+FNGF RD + + + R ++ + K+ S+
Sbjct: 491 VHSLTRSDSSFNGFERDTRRRSSDIARIKNREINLPSSSLSKQRNSM 537
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 27.1 bits (57), Expect = 1.5
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +2
Query: 194 KIDKELIDSQNARLFIIQKYDELCNKINFLTELDSTFNGFRRDVKSIEQQVCELSQRVDS 373
K+D+E I N R I+ + N I T + N +R ++ I ++C + + D
Sbjct: 663 KVDRERIGFSNKRAAILLRG---ANVIGMTT---TGLNKYRDILERINPKICFIEEAADV 716
Query: 374 IEKRIICKECPSL 412
+E II PSL
Sbjct: 717 LEGPIIPAVFPSL 729
>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 26.2 bits (55), Expect = 2.6
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +2
Query: 239 IIQKYDELCNKINFLTELDSTFNGFRRDVKSIEQQVCELSQRVDSIEKR 385
I +Y E F + DST R V+ + + C L + ++SI K+
Sbjct: 123 IFARYSEWKAYDPFFQQKDSTLKSSRAAVEELAGRYCLLEEELNSIAKK 171
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 25.8 bits (54), Expect = 3.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 320 DVKSIEQQVCELSQRVDSIEKRIICKECPSLTSAAF 427
D K++E+Q CE + + IC SLT A F
Sbjct: 50 DGKTLEKQHCESCSIREDSSRHGICGSASSLTEAIF 85
>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 334
Score = 25.4 bits (53), Expect = 4.5
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +2
Query: 197 IDKELIDSQNARLFIIQKYDELCNKINFLT---ELDSTFNGFRRDVKSIEQQVCE 352
I K+L SQ+ IIQK+D NK NF E+ TFN + +C+
Sbjct: 253 IAKQLAISQDVAKEIIQKFD---NKTNFTVANGEIFLTFNALDDVSPEMHSDLCQ 304
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 4.5
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = +2
Query: 188 VNKIDKELIDSQNARLFIIQKYDELCNKINFLTELDSTFNGFRRDVKSIEQQVCELSQRV 367
+ K+ K+ + A + KY LC K+N+ + G K +E+ +L++
Sbjct: 132 IEKVHKDKLSKHQALVKAQDKYHYLCKKVNYYVSQQNMLFG-----KELEKNNAKLNKTQ 186
Query: 368 DSI 376
++I
Sbjct: 187 NAI 189
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.0 bits (52), Expect = 5.9
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 85 CYRHFNVLLYCN-ETILDFRISCCIFYAA 2
C R F+ CN + ILD I+CC F AA
Sbjct: 248 CVRKFSPDGSCNSQGILDRYITCCQFSAA 276
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 25.0 bits (52), Expect = 5.9
Identities = 14/80 (17%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +2
Query: 152 IESKFDEIKIGIVNKIDKELIDSQNARLFIIQKYDELCNKINF-LTELDSTFNGFRRDVK 328
++++ +K G + ++ E+++ + + + + D L K ++ FN +
Sbjct: 140 VQNEMTSMK-GEMAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRFN 198
Query: 329 SIEQQVCELSQRVDSIEKRI 388
SI+++ + QR+DS+++++
Sbjct: 199 SIDRRFDSMEQRLDSMDQKM 218
>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 25.0 bits (52), Expect = 5.9
Identities = 14/80 (17%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +2
Query: 152 IESKFDEIKIGIVNKIDKELIDSQNARLFIIQKYDELCNKINF-LTELDSTFNGFRRDVK 328
++++ +K G + ++ E+++ + + + + D L K ++ FN +
Sbjct: 140 VQNEMTSMK-GEMAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRFN 198
Query: 329 SIEQQVCELSQRVDSIEKRI 388
SI+++ + QR+DS+++++
Sbjct: 199 SIDRRFDSMEQRLDSMDQKM 218
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 24.6 bits (51), Expect = 7.9
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 353 LSQRVDSIEKRIICKECPSLTSAAF*IATVNYYAYEN 463
LS+R+D++ +I + C SL + +V Y+N
Sbjct: 256 LSERIDALSDAVIYELCDSLIPYWYRALSVTLLLYDN 292
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,496,143
Number of Sequences: 5004
Number of extensions: 23637
Number of successful extensions: 86
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -