Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23l13
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   4.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.2  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   5.6  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   5.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.8  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 546 CMS*MLPRRKKCCQTY 593
           C   M PR+K CC+++
Sbjct: 389 CELHMQPRKKNCCRSW 404


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 546 CMS*MLPRRKKCCQTY 593
           C   M PR+K CC+++
Sbjct: 389 CELHMQPRKKNCCRSW 404


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 358 KFLKYVWWNKPVHTFSQPGAPNMTLSTV 441
           K L  VWW+     + +  +PN T+++V
Sbjct: 65  KVLLSVWWDYKGIVYFELLSPNRTINSV 92


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 358 KFLKYVWWNKPVHTFSQPGAPNMTLSTV 441
           K L  VWW+     + +   PN T+++V
Sbjct: 66  KVLLLVWWDHKGIVYFELLPPNRTINSV 93


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 358 KFLKYVWWNKPVHTFSQPGAPNMTLSTV 441
           K L  VWW+     + +   PN T+++V
Sbjct: 187 KVLLSVWWDYKGIVYFELLPPNRTINSV 214


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -1

Query: 546 IILIHSFVCHQTVITKNMTASHSMRQYW 463
           + ++HSF      I  + TAS S  +++
Sbjct: 346 VAVLHSFQMKNVTIVDHHTASESFMKHY 373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,077
Number of Sequences: 438
Number of extensions: 3974
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)