Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23l06
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.0  

>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
 Frame = +1

Query: 253 PLLSYFNDVCNPHSELKWY*EGDTAKSSAVRPLPYRNTSAK*PLTRVQNRKHLKARLHLT 432
           PLL  FND   P +           K S +     R+ ++   LT +  +   +  LH  
Sbjct: 168 PLLKSFNDSAIPENAANLSSSSKNMKDSTLSSQKARSNTSSSFLTPLHEQLESRCALHTA 227

Query: 433 RRTPANLK--LRL*QRKTP*A*SVLLGAVKRGT 525
            + P   K  LR  +  +P +   +L A+   T
Sbjct: 228 AKDPFRSKNSLRCNRGHSPLSSQQILPAISNNT 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,260,420
Number of Sequences: 5004
Number of extensions: 42370
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)