Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23l04
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    28   1.2  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    27   2.1  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   6.5  
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    25   8.7  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    25   8.7  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    25   8.7  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   8.7  

>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 324 IFICLQL*SFCSCVSSMSPLFNGESEDS-AFIL 229
           + I + L  FC C S MSPLF   +  + AFIL
Sbjct: 551 LIITIGLVMFCKCFSEMSPLFACSTYSALAFIL 583


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 419 LDGLNSANSQQMMLFPSTFSLAHHCRQMFQSLFSY 315
           +D + S NSQ     P T+   H  RQM Q  + Y
Sbjct: 11  IDMMRSKNSQNASQPPETYPFYHEVRQMSQHPWMY 45


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -1

Query: 338  MFQSLFSYAYNYNHFVLVSPQ*VPCSMESLRIRLLYCTLCYVFFSISNSW 189
            +FQSL + A     F+       P +M  LR   L C   + FF  +N W
Sbjct: 1010 VFQSLLNPADTSFRFLEKREDIRPIAMFRLRGEFLLCYSDFAFFVNTNGW 1059


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 218 YVFFSISNSWTLISNHRKTSNFSVSYKI 135
           YVF  +S+  + IS+H K+ N  + Y +
Sbjct: 547 YVFKELSSIQSYISSHDKSKNLDLHYLV 574


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 359 EKMLRERASSAENWQNSDHQVNEEEIWKDAV 451
           E + R+   S+E +QN   QVN++ + KD +
Sbjct: 39  EGLKRKLFDSSEYFQNFSFQVNDDLLGKDVI 69


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +2

Query: 218 NTTYNIKAESSDSPLNRGLIEETQEQNDYNCKH 316
           NTTYN    ++      G+ ++T      NC H
Sbjct: 380 NTTYNTNINNTPQTAISGITQDTSPSIRTNCHH 412


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 487 PLVYVHSAAVTIDSVFPYFFLIHLMV 410
           P+V   + AVT DSV+P+  L+ L++
Sbjct: 344 PIVPSAAVAVTSDSVWPFETLVELLL 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,942
Number of Sequences: 5004
Number of extensions: 57014
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)